115 related articles for article (PubMed ID: 24380763)
1. Backbone flexibility of CDR3 and immune recognition of antigens.
Haidar JN; Zhu W; Lypowy J; Pierce BG; Bari A; Persaud K; Luna X; Snavely M; Ludwig D; Weng Z
J Mol Biol; 2014 Apr; 426(7):1583-99. PubMed ID: 24380763
[TBL] [Abstract][Full Text] [Related]
2. Crystal structures of high affinity human T-cell receptors bound to peptide major histocompatibility complex reveal native diagonal binding geometry.
Sami M; Rizkallah PJ; Dunn S; Molloy P; Moysey R; Vuidepot A; Baston E; Todorov P; Li Y; Gao F; Boulter JM; Jakobsen BK
Protein Eng Des Sel; 2007 Aug; 20(8):397-403. PubMed ID: 17644531
[TBL] [Abstract][Full Text] [Related]
3. Cancer-related mutations in BRCA1-BRCT cause long-range structural changes in protein-protein binding sites: a molecular dynamics study.
Gough CA; Gojobori T; Imanishi T
Proteins; 2007 Jan; 66(1):69-86. PubMed ID: 17063491
[TBL] [Abstract][Full Text] [Related]
4. Comparison of the three-dimensional structures of a humanized and a chimeric Fab of an anti-gamma-interferon antibody.
Fan ZC; Shan L; Goldsteen BZ; Guddat LW; Thakur A; Landolfi NF; Co MS; Vasquez M; Queen C; Ramsland PA; Edmundson AB
J Mol Recognit; 1999; 12(1):19-32. PubMed ID: 10398393
[TBL] [Abstract][Full Text] [Related]
5. Side-chain entropy effects on protein secondary structure formation.
Chellgren BW; Creamer TP
Proteins; 2006 Feb; 62(2):411-20. PubMed ID: 16315271
[TBL] [Abstract][Full Text] [Related]
6. T-Cell Receptor CDR3 Loop Conformations in Solution Shift the Relative Vα-Vβ Domain Distributions.
Fernández-Quintero ML; Pomarici ND; Loeffler JR; Seidler CA; Liedl KR
Front Immunol; 2020; 11():1440. PubMed ID: 32733478
[TBL] [Abstract][Full Text] [Related]
7. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
8. Empirical evaluation of the influence of side chains on the conformational entropy of the polypeptide backbone.
Stites WE; Pranata J
Proteins; 1995 Jun; 22(2):132-40. PubMed ID: 7567961
[TBL] [Abstract][Full Text] [Related]
9. Affinity maturation of a humanized rat antibody for anti-RAGE therapy: comprehensive mutagenesis reveals a high level of mutational plasticity both inside and outside the complementarity-determining regions.
Finlay WJ; Cunningham O; Lambert MA; Darmanin-Sheehan A; Liu X; Fennell BJ; Mahon CM; Cummins E; Wade JM; O'Sullivan CM; Tan XY; Piche N; Pittman DD; Paulsen J; Tchistiakova L; Kodangattil S; Gill D; Hufton SE
J Mol Biol; 2009 May; 388(3):541-58. PubMed ID: 19285987
[TBL] [Abstract][Full Text] [Related]
10. Are ambivalent α-helices entropically driven?
Bhattacharjee N; Biswas P
Protein Eng Des Sel; 2012 Feb; 25(2):73-9. PubMed ID: 22184455
[TBL] [Abstract][Full Text] [Related]
11. The CDR3 regions of an immunodominant T cell receptor dictate the 'energetic landscape' of peptide-MHC recognition.
Borg NA; Ely LK; Beddoe T; Macdonald WA; Reid HH; Clements CS; Purcell AW; Kjer-Nielsen L; Miles JJ; Burrows SR; McCluskey J; Rossjohn J
Nat Immunol; 2005 Feb; 6(2):171-80. PubMed ID: 15640805
[TBL] [Abstract][Full Text] [Related]
12. Engineering a high-affinity anti-IL-15 antibody: crystal structure reveals an α-helix in VH CDR3 as key component of paratope.
Lowe DC; Gerhardt S; Ward A; Hargreaves D; Anderson M; Ferraro F; Pauptit RA; Pattison DV; Buchanan C; Popovic B; Finch DK; Wilkinson T; Sleeman M; Vaughan TJ; Mallinder PR
J Mol Biol; 2011 Feb; 406(1):160-75. PubMed ID: 21167836
[TBL] [Abstract][Full Text] [Related]
13. Automated identification of complementarity determining regions (CDRs) reveals peculiar characteristics of CDRs and B cell epitopes.
Ofran Y; Schlessinger A; Rost B
J Immunol; 2008 Nov; 181(9):6230-5. PubMed ID: 18941213
[TBL] [Abstract][Full Text] [Related]
14. Cluster and information entropy patterns in immunoglobulin complementarity determining regions.
Culler S; Hsiao TR; Glassy M; Chau PC
Biosystems; 2004 Nov; 77(1-3):195-212. PubMed ID: 15527957
[TBL] [Abstract][Full Text] [Related]
15. High-affinity, peptide-specific T cell receptors can be generated by mutations in CDR1, CDR2 or CDR3.
Chlewicki LK; Holler PD; Monti BC; Clutter MR; Kranz DM
J Mol Biol; 2005 Feb; 346(1):223-39. PubMed ID: 15663940
[TBL] [Abstract][Full Text] [Related]
16. CDR3 loop flexibility contributes to the degeneracy of TCR recognition.
Reiser JB; Darnault C; Grégoire C; Mosser T; Mazza G; Kearney A; van der Merwe PA; Fontecilla-Camps JC; Housset D; Malissen B
Nat Immunol; 2003 Mar; 4(3):241-7. PubMed ID: 12563259
[TBL] [Abstract][Full Text] [Related]
17. Backbone entropy of loops as a measure of their flexibility: application to a ras protein simulated by molecular dynamics.
Meirovitch H; Hendrickson TF
Proteins; 1997 Oct; 29(2):127-40. PubMed ID: 9329078
[TBL] [Abstract][Full Text] [Related]
18. Free energies of amino acid side-chain rotamers in alpha-helices, beta-sheets and alpha-helix N-caps.
Stapley BJ; Doig AJ
J Mol Biol; 1997 Sep; 272(3):456-64. PubMed ID: 9325103
[TBL] [Abstract][Full Text] [Related]
19. Characterization of the backbone and side chain dynamics of the CaM-CaMKIp complex reveals microscopic contributions to protein conformational entropy.
Frederick KK; Kranz JK; Wand AJ
Biochemistry; 2006 Aug; 45(32):9841-8. PubMed ID: 16893184
[TBL] [Abstract][Full Text] [Related]
20. Evidence for structural plasticity of heavy chain complementarity-determining region 3 in antibody-ssDNA recognition.
Schuermann JP; Prewitt SP; Davies C; Deutscher SL; Tanner JJ
J Mol Biol; 2005 Apr; 347(5):965-78. PubMed ID: 15784256
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
