These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

145 related articles for article (PubMed ID: 24386392)

  • 1. Rapid identification of sequences for orphan enzymes to power accurate protein annotation.
    Ramkissoon KR; Miller JK; Ojha S; Watson DS; Bomar MG; Galande AK; Shearer AG
    PLoS One; 2013; 8(12):e84508. PubMed ID: 24386392
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study.
    Sinha S; Lynn AM; Desai DK
    BMC Bioinformatics; 2020 Oct; 21(1):466. PubMed ID: 33076816
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites.
    Hadadi N; MohammadiPeyhani H; Miskovic L; Seijo M; Hatzimanikatis V
    Proc Natl Acad Sci U S A; 2019 Apr; 116(15):7298-7307. PubMed ID: 30910961
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe.
    Wang T; Mori H; Zhang C; Kurokawa K; Xing XH; Yamada T
    BMC Bioinformatics; 2015 Mar; 16():96. PubMed ID: 25888481
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ORENZA: a web resource for studying ORphan ENZyme activities.
    Lespinet O; Labedan B
    BMC Bioinformatics; 2006 Oct; 7():436. PubMed ID: 17026747
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Enzyme function prediction using contrastive learning.
    Yu T; Cui H; Li JC; Luo Y; Jiang G; Zhao H
    Science; 2023 Mar; 379(6639):1358-1363. PubMed ID: 36996195
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function.
    Almonacid DE; Yera ER; Mitchell JB; Babbitt PC
    PLoS Comput Biol; 2010 Mar; 6(3):e1000700. PubMed ID: 20300652
    [TBL] [Abstract][Full Text] [Related]  

  • 8. BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation.
    Bannert C; Welfle A; Aus dem Spring C; Schomburg D
    BMC Bioinformatics; 2010 Dec; 11():589. PubMed ID: 21122127
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BrEPS 2.0: Optimization of sequence pattern prediction for enzyme annotation.
    Dudek CA; Dannheim H; Schomburg D
    PLoS One; 2017; 12(7):e0182216. PubMed ID: 28750104
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Profiling the orphan enzymes.
    Sorokina M; Stam M; Médigue C; Lespinet O; Vallenet D
    Biol Direct; 2014 Jun; 9():10. PubMed ID: 24906382
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-wide enzyme annotation with precision control: catalytic families (CatFam) databases.
    Yu C; Zavaljevski N; Desai V; Reifman J
    Proteins; 2009 Feb; 74(2):449-60. PubMed ID: 18636476
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.
    Yamada T; Waller AS; Raes J; Zelezniak A; Perchat N; Perret A; Salanoubat M; Patil KR; Weissenbach J; Bork P
    Mol Syst Biol; 2012 May; 8():581. PubMed ID: 22569339
    [TBL] [Abstract][Full Text] [Related]  

  • 13. EnzymeDetector: an integrated enzyme function prediction tool and database.
    Quester S; Schomburg D
    BMC Bioinformatics; 2011 Sep; 12():376. PubMed ID: 21943292
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition.
    Cai YD; Zhou GP; Chou KC
    J Theor Biol; 2005 May; 234(1):145-9. PubMed ID: 15721043
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genomic Enzymology: Web Tools for Leveraging Protein Family Sequence-Function Space and Genome Context to Discover Novel Functions.
    Gerlt JA
    Biochemistry; 2017 Aug; 56(33):4293-4308. PubMed ID: 28826221
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database.
    Park BH; Karpinets TV; Syed MH; Leuze MR; Uberbacher EC
    Glycobiology; 2010 Dec; 20(12):1574-84. PubMed ID: 20696711
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Orphan enzymes could be an unexplored reservoir of new drug targets.
    Lespinet O; Labedan B
    Drug Discov Today; 2006 Apr; 11(7-8):300-5. PubMed ID: 16580971
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Puzzling over orphan enzymes.
    Lespinet O; Labedan B
    Cell Mol Life Sci; 2006 Mar; 63(5):517-23. PubMed ID: 16465439
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sequence-based enzyme catalytic domain prediction using clustering and aggregated mutual information content.
    Choi K; Kim S
    J Bioinform Comput Biol; 2011 Oct; 9(5):597-611. PubMed ID: 21976378
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 8.