144 related articles for article (PubMed ID: 24389657)
1. Bias from removing read duplication in ultra-deep sequencing experiments.
Zhou W; Chen T; Zhao H; Eterovic AK; Meric-Bernstam F; Mills GB; Chen K
Bioinformatics; 2014 Apr; 30(8):1073-1080. PubMed ID: 24389657
[TBL] [Abstract][Full Text] [Related]
2. A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments.
Bansal V
BMC Bioinformatics; 2017 Mar; 18(Suppl 3):43. PubMed ID: 28361665
[TBL] [Abstract][Full Text] [Related]
3. Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.
Chen S; Zhou Y; Chen Y; Huang T; Liao W; Xu Y; Li Z; Gu J
BMC Bioinformatics; 2019 Dec; 20(Suppl 23):606. PubMed ID: 31881822
[TBL] [Abstract][Full Text] [Related]
4. Removing duplicate reads using graphics processing units.
Manconi A; Moscatelli M; Armano G; Gnocchi M; Orro A; Milanesi L
BMC Bioinformatics; 2016 Nov; 17(Suppl 12):346. PubMed ID: 28185553
[TBL] [Abstract][Full Text] [Related]
5. WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing.
Holt C; Losic B; Pai D; Zhao Z; Trinh Q; Syam S; Arshadi N; Jang GH; Ali J; Beck T; McPherson J; Muthuswamy LB
Bioinformatics; 2014 Mar; 30(6):768-74. PubMed ID: 24192544
[TBL] [Abstract][Full Text] [Related]
6. Allele-specific copy-number discovery from whole-genome and whole-exome sequencing.
Wang W; Wang W; Sun W; Crowley JJ; Szatkiewicz JP
Nucleic Acids Res; 2015 Aug; 43(14):e90. PubMed ID: 25883151
[TBL] [Abstract][Full Text] [Related]
7. CNV-guided multi-read allocation for ChIP-seq.
Zhang Q; Keleş S
Bioinformatics; 2014 Oct; 30(20):2860-7. PubMed ID: 24966364
[TBL] [Abstract][Full Text] [Related]
8. Alignment-free clustering of UMI tagged DNA molecules.
Orabi B; Erhan E; McConeghy B; Volik SV; Le Bihan S; Bell R; Collins CC; Chauve C; Hach F
Bioinformatics; 2019 Jun; 35(11):1829-1836. PubMed ID: 30351359
[TBL] [Abstract][Full Text] [Related]
9. Biased estimates of clonal evolution and subclonal heterogeneity can arise from PCR duplicates in deep sequencing experiments.
Smith EN; Jepsen K; Khosroheidari M; Rassenti LZ; D'Antonio M; Ghia EM; Carson DA; Jamieson CH; Kipps TJ; Frazer KA
Genome Biol; 2014 Aug; 15(8):420. PubMed ID: 25103687
[TBL] [Abstract][Full Text] [Related]
10. Exploration of whole genome amplification generated chimeric sequences in long-read sequencing data.
Lu N; Qiao Y; An P; Luo J; Bi C; Li M; Lu Z; Tu J
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37529913
[TBL] [Abstract][Full Text] [Related]
11. RepLong: de novo repeat identification using long read sequencing data.
Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
[TBL] [Abstract][Full Text] [Related]
12. SimLoRD: Simulation of Long Read Data.
Stöcker BK; Köster J; Rahmann S
Bioinformatics; 2016 Sep; 32(17):2704-6. PubMed ID: 27166244
[TBL] [Abstract][Full Text] [Related]
13. When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.
Lonardi S; Mirebrahim H; Wanamaker S; Alpert M; Ciardo G; Duma D; Close TJ
Bioinformatics; 2015 Sep; 31(18):2972-80. PubMed ID: 25995232
[TBL] [Abstract][Full Text] [Related]
14. Detecting dispersed duplications in high-throughput sequencing data using a database-free approach.
Kroon M; Lameijer EW; Lakenberg N; Hehir-Kwa JY; Thung DT; Slagboom PE; Kok JN; Ye K
Bioinformatics; 2016 Feb; 32(4):505-10. PubMed ID: 26508759
[TBL] [Abstract][Full Text] [Related]
15. Filtering duplicate reads from 454 pyrosequencing data.
Balzer S; Malde K; Grohme MA; Jonassen I
Bioinformatics; 2013 Apr; 29(7):830-6. PubMed ID: 23376350
[TBL] [Abstract][Full Text] [Related]
16. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
[TBL] [Abstract][Full Text] [Related]
17. Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing.
Ros-Freixedes R; Battagin M; Johnsson M; Gorjanc G; Mileham AJ; Rounsley SD; Hickey JM
Genet Sel Evol; 2018 Dec; 50(1):64. PubMed ID: 30545283
[TBL] [Abstract][Full Text] [Related]
18. CNV-BAC: Copy number Variation Detection in Bacterial Circular Genome.
Wu L; Wang H; Xia Y; Xi R
Bioinformatics; 2020 Jun; 36(12):3890-3891. PubMed ID: 32219377
[TBL] [Abstract][Full Text] [Related]
19. Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping.
Dai H; Guan Y
Bioinformatics; 2020 May; 36(10):3254-3256. PubMed ID: 32091581
[TBL] [Abstract][Full Text] [Related]
20. Empirical estimation of sequencing error rates using smoothing splines.
Zhu X; Wang J; Peng B; Shete S
BMC Bioinformatics; 2016 Apr; 17():177. PubMed ID: 27102907
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
