These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

301 related articles for article (PubMed ID: 24389658)

  • 1. CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data.
    Guan D; Shao J; Deng Y; Wang P; Zhao Z; Liang Y; Wang J; Yan B
    Bioinformatics; 2014 Apr; 30(8):1190-1192. PubMed ID: 24389658
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PTHGRN: unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data.
    Guan D; Shao J; Zhao Z; Wang P; Qin J; Deng Y; Boheler KR; Wang J; Yan B
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W130-6. PubMed ID: 24875471
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Integrative analysis of ChIP-chip and ChIP-seq dataset.
    Zhu LJ
    Methods Mol Biol; 2013; 1067():105-24. PubMed ID: 23975789
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Integrative analysis of histone ChIP-seq and transcription data using Bayesian mixture models.
    Klein HU; Schäfer M; Porse BT; Hasemann MS; Ickstadt K; Dugas M
    Bioinformatics; 2014 Apr; 30(8):1154-1162. PubMed ID: 24403540
    [TBL] [Abstract][Full Text] [Related]  

  • 5. EpiRegNet: constructing epigenetic regulatory network from high throughput gene expression data for humans.
    Wang LY; Wang P; Li MJ; Qin J; Wang X; Zhang MQ; Wang J
    Epigenetics; 2011 Dec; 6(12):1505-12. PubMed ID: 22139581
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks.
    Wang P; Qin J; Qin Y; Zhu Y; Wang LY; Li MJ; Zhang MQ; Wang J
    Nucleic Acids Res; 2015 Jul; 43(W1):W264-9. PubMed ID: 25916854
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CoRegNet: reconstruction and integrated analysis of co-regulatory networks.
    Nicolle R; Radvanyi F; Elati M
    Bioinformatics; 2015 Sep; 31(18):3066-8. PubMed ID: 25979476
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Nebula--a web-server for advanced ChIP-seq data analysis.
    Boeva V; Lermine A; Barette C; Guillouf C; Barillot E
    Bioinformatics; 2012 Oct; 28(19):2517-9. PubMed ID: 22829625
    [TBL] [Abstract][Full Text] [Related]  

  • 9. iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data.
    Yang CC; Andrews EH; Chen MH; Wang WY; Chen JJ; Gerstein M; Liu CC; Cheng C
    BMC Genomics; 2016 Aug; 17(1):632. PubMed ID: 27519564
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Integration of Genome-Wide TF Binding and Gene Expression Data to Characterize Gene Regulatory Networks in Plant Development.
    Chen D; Kaufmann K
    Methods Mol Biol; 2017; 1629():239-269. PubMed ID: 28623590
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GeNeCK: a web server for gene network construction and visualization.
    Zhang M; Li Q; Yu D; Yao B; Guo W; Xie Y; Xiao G
    BMC Bioinformatics; 2019 Jan; 20(1):12. PubMed ID: 30616521
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CEAS: cis-regulatory element annotation system.
    Ji X; Li W; Song J; Wei L; Liu XS
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W551-4. PubMed ID: 16845068
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data.
    Ambrosini G; Dreos R; Kumar S; Bucher P
    BMC Genomics; 2016 Nov; 17(1):938. PubMed ID: 27863463
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms.
    Park CY; Krishnan A; Zhu Q; Wong AK; Lee YS; Troyanskaya OG
    Bioinformatics; 2015 Apr; 31(7):1093-101. PubMed ID: 25431329
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Seqinspector: position-based navigation through the ChIP-seq data landscape to identify gene expression regulators.
    Piechota M; Korostynski M; Ficek J; Tomski A; Przewlocki R
    BMC Bioinformatics; 2016 Feb; 17():85. PubMed ID: 26868127
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.
    Chen X; Gu J; Wang X; Jung JG; Wang TL; Hilakivi-Clarke L; Clarke R; Xuan J
    Bioinformatics; 2018 May; 34(10):1733-1740. PubMed ID: 29280996
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Cistrome: an integrative platform for transcriptional regulation studies.
    Liu T; Ortiz JA; Taing L; Meyer CA; Lee B; Zhang Y; Shin H; Wong SS; Ma J; Lei Y; Pape UJ; Poidinger M; Chen Y; Yeung K; Brown M; Turpaz Y; Liu XS
    Genome Biol; 2011 Aug; 12(8):R83. PubMed ID: 21859476
    [TBL] [Abstract][Full Text] [Related]  

  • 18. cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets.
    Xu H; Yu H; Tu K; Shi Q; Wei C; Li YY; Li YX
    BMC Syst Biol; 2013; 7 Suppl 2(Suppl 2):S7. PubMed ID: 24565134
    [TBL] [Abstract][Full Text] [Related]  

  • 19. QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.
    Thibodeau A; Márquez EJ; Luo O; Ruan Y; Menghi F; Shin DG; Stitzel ML; Vera-Licona P; Ucar D
    PLoS Comput Biol; 2016 Jun; 12(6):e1004809. PubMed ID: 27336171
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration.
    Arneson D; Bhattacharya A; Shu L; Mäkinen VP; Yang X
    BMC Genomics; 2016 Sep; 17(1):722. PubMed ID: 27612452
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.