278 related articles for article (PubMed ID: 24391148)
1. Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.
Kunde-Ramamoorthy G; Coarfa C; Laritsky E; Kessler NJ; Harris RA; Xu M; Chen R; Shen L; Milosavljevic A; Waterland RA
Nucleic Acids Res; 2014 Apr; 42(6):e43. PubMed ID: 24391148
[TBL] [Abstract][Full Text] [Related]
2. An integrative approach for efficient analysis of whole genome bisulfite sequencing data.
Lee JH; Park SJ; Kenta N
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S14. PubMed ID: 26680746
[TBL] [Abstract][Full Text] [Related]
3. BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation.
Lim JQ; Tennakoon C; Li G; Wong E; Ruan Y; Wei CL; Sung WK
Genome Biol; 2012 Oct; 13(10):R82. PubMed ID: 23034162
[TBL] [Abstract][Full Text] [Related]
4. BSMAP: whole genome bisulfite sequence MAPping program.
Xi Y; Li W
BMC Bioinformatics; 2009 Jul; 10():232. PubMed ID: 19635165
[TBL] [Abstract][Full Text] [Related]
5. BS Seeker: precise mapping for bisulfite sequencing.
Chen PY; Cokus SJ; Pellegrini M
BMC Bioinformatics; 2010 Apr; 11():203. PubMed ID: 20416082
[TBL] [Abstract][Full Text] [Related]
6. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
[TBL] [Abstract][Full Text] [Related]
7. Methodological aspects of whole-genome bisulfite sequencing analysis.
Adusumalli S; Mohd Omar MF; Soong R; Benoukraf T
Brief Bioinform; 2015 May; 16(3):369-79. PubMed ID: 24867940
[TBL] [Abstract][Full Text] [Related]
8. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
[TBL] [Abstract][Full Text] [Related]
9. Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform.
Lin QT; Yang W; Zhang X; Li QG; Liu YF; Yan Q; Sun L
BMC Bioinformatics; 2023 Jan; 24(1):33. PubMed ID: 36721080
[TBL] [Abstract][Full Text] [Related]
10. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
Guo W; Fiziev P; Yan W; Cokus S; Sun X; Zhang MQ; Chen PY; Pellegrini M
BMC Genomics; 2013 Nov; 14():774. PubMed ID: 24206606
[TBL] [Abstract][Full Text] [Related]
11. Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.
Stevens M; Cheng JB; Li D; Xie M; Hong C; Maire CL; Ligon KL; Hirst M; Marra MA; Costello JF; Wang T
Genome Res; 2013 Sep; 23(9):1541-53. PubMed ID: 23804401
[TBL] [Abstract][Full Text] [Related]
12. Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis.
Nunn A; Otto C; Stadler PF; Langenberger D
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33624017
[TBL] [Abstract][Full Text] [Related]
13. Investigating bisulfite short-read mapping failure with hairpin bisulfite sequencing data.
Porter J; Sun MA; Xie H; Zhang L
BMC Genomics; 2015; 16 Suppl 11(Suppl 11):S2. PubMed ID: 26576456
[TBL] [Abstract][Full Text] [Related]
14. Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.
Prezza N; Vezzi F; Käller M; Policriti A
BMC Bioinformatics; 2016 Mar; 17 Suppl 4(Suppl 4):69. PubMed ID: 26961371
[TBL] [Abstract][Full Text] [Related]
15. DNA Methylation Profiling Using Long-Read Single Molecule Real-Time Bisulfite Sequencing (SMRT-BS).
Yang Y; Scott SA
Methods Mol Biol; 2017; 1654():125-134. PubMed ID: 28986786
[TBL] [Abstract][Full Text] [Related]
16. Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data.
Hong C; Clement NL; Clement S; Hammoud SS; Carrell DT; Cairns BR; Snell Q; Clement MJ; Johnson WE
BMC Bioinformatics; 2013 Nov; 14():337. PubMed ID: 24261665
[TBL] [Abstract][Full Text] [Related]
17. Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data.
Tsuji J; Weng Z
Brief Bioinform; 2016 Nov; 17(6):938-952. PubMed ID: 26628557
[TBL] [Abstract][Full Text] [Related]
18. Analyzing the cancer methylome through targeted bisulfite sequencing.
Lee EJ; Luo J; Wilson JM; Shi H
Cancer Lett; 2013 Nov; 340(2):171-8. PubMed ID: 23200671
[TBL] [Abstract][Full Text] [Related]
19. Benchmarking DNA methylation analysis of 14 alignment algorithms for whole genome bisulfite sequencing in mammals.
Gong W; Pan X; Xu D; Ji G; Wang Y; Tian Y; Cai J; Li J; Zhang Z; Yuan X
Comput Struct Biotechnol J; 2022; 20():4704-4716. PubMed ID: 36147684
[TBL] [Abstract][Full Text] [Related]
20. Microdroplet PCR for Highly Multiplexed Targeted Bisulfite Sequencing.
Komori HK; LaMere SA; Hart T; Head SR; Torkamani A; Salomon DR
Methods Mol Biol; 2018; 1708():333-348. PubMed ID: 29224152
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
