367 related articles for article (PubMed ID: 24410833)
1. Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks.
Kukic P; Mirabello C; Tradigo G; Walsh I; Veltri P; Pollastri G
BMC Bioinformatics; 2014 Jan; 15():6. PubMed ID: 24410833
[TBL] [Abstract][Full Text] [Related]
2. Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
Walsh I; Baù D; Martin AJ; Mooney C; Vullo A; Pollastri G
BMC Struct Biol; 2009 Jan; 9():5. PubMed ID: 19183478
[TBL] [Abstract][Full Text] [Related]
3. A two-stage approach for improved prediction of residue contact maps.
Vullo A; Walsh I; Pollastri G
BMC Bioinformatics; 2006 Mar; 7():180. PubMed ID: 16573808
[TBL] [Abstract][Full Text] [Related]
4. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.
Wang S; Sun S; Li Z; Zhang R; Xu J
PLoS Comput Biol; 2017 Jan; 13(1):e1005324. PubMed ID: 28056090
[TBL] [Abstract][Full Text] [Related]
5. Ab initio and homology based prediction of protein domains by recursive neural networks.
Walsh I; Martin AJ; Mooney C; Rubagotti E; Vullo A; Pollastri G
BMC Bioinformatics; 2009 Jun; 10():195. PubMed ID: 19558651
[TBL] [Abstract][Full Text] [Related]
6. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13.
Hou J; Wu T; Cao R; Cheng J
Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027
[TBL] [Abstract][Full Text] [Related]
7. GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function.
Pietal MJ; Bujnicki JM; Kozlowski LP
Bioinformatics; 2015 Nov; 31(21):3499-505. PubMed ID: 26130575
[TBL] [Abstract][Full Text] [Related]
8. DeepDist: real-value inter-residue distance prediction with deep residual convolutional network.
Wu T; Guo Z; Hou J; Cheng J
BMC Bioinformatics; 2021 Jan; 22(1):30. PubMed ID: 33494711
[TBL] [Abstract][Full Text] [Related]
9. DeepHelicon: Accurate prediction of inter-helical residue contacts in transmembrane proteins by residual neural networks.
Sun J; Frishman D
J Struct Biol; 2020 Oct; 212(1):107574. PubMed ID: 32663598
[TBL] [Abstract][Full Text] [Related]
10. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
[TBL] [Abstract][Full Text] [Related]
11. DeepCDpred: Inter-residue distance and contact prediction for improved prediction of protein structure.
Ji S; Oruç T; Mead L; Rehman MF; Thomas CM; Butterworth S; Winn PJ
PLoS One; 2019; 14(1):e0205214. PubMed ID: 30620738
[TBL] [Abstract][Full Text] [Related]
12. Freeprotmap: waiting-free prediction method for protein distance map.
Huang J; Li J; Chen Q; Wang X; Chen G; Tang J
BMC Bioinformatics; 2024 May; 25(1):176. PubMed ID: 38704533
[TBL] [Abstract][Full Text] [Related]
13. Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins.
Roche R; Bhattacharya S; Bhattacharya D
PLoS Comput Biol; 2021 Feb; 17(2):e1008753. PubMed ID: 33621244
[TBL] [Abstract][Full Text] [Related]
14. CNNcon: improved protein contact maps prediction using cascaded neural networks.
Ding W; Xie J; Dai D; Zhang H; Xie H; Zhang W
PLoS One; 2013; 8(4):e61533. PubMed ID: 23626696
[TBL] [Abstract][Full Text] [Related]
15. Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.
Zhang C; Mortuza SM; He B; Wang Y; Zhang Y
Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):136-151. PubMed ID: 29082551
[TBL] [Abstract][Full Text] [Related]
16. New Labeling Methods for Deep Learning Real-Valued Inter-Residue Distance Prediction.
Barger J; Adhikari B
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(6):3586-3594. PubMed ID: 34559660
[TBL] [Abstract][Full Text] [Related]
17. Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners.
Pollastri G; Baldi P
Bioinformatics; 2002; 18 Suppl 1():S62-70. PubMed ID: 12169532
[TBL] [Abstract][Full Text] [Related]
18. Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction.
Braun T; Koehler Leman J; Lange OF
PLoS Comput Biol; 2015 Dec; 11(12):e1004661. PubMed ID: 26713437
[TBL] [Abstract][Full Text] [Related]
19. Prediction of protein beta-residue contacts by Markov logic networks with grounding-specific weights.
Lippi M; Frasconi P
Bioinformatics; 2009 Sep; 25(18):2326-33. PubMed ID: 19592394
[TBL] [Abstract][Full Text] [Related]
20. Assessment of protein assembly prediction in CASP12.
Lafita A; Bliven S; Kryshtafovych A; Bertoni M; Monastyrskyy B; Duarte JM; Schwede T; Capitani G
Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):247-256. PubMed ID: 29071742
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
