305 related articles for article (PubMed ID: 24417896)
1. Differential protein occupancy profiling of the mRNA transcriptome.
Schueler M; Munschauer M; Gregersen LH; Finzel A; Loewer A; Chen W; Landthaler M; Dieterich C
Genome Biol; 2014 Jan; 15(1):R15. PubMed ID: 24417896
[TBL] [Abstract][Full Text] [Related]
2. High-resolution profiling of protein occupancy on polyadenylated RNA transcripts.
Munschauer M; Schueler M; Dieterich C; Landthaler M
Methods; 2014 Feb; 65(3):302-9. PubMed ID: 24096003
[TBL] [Abstract][Full Text] [Related]
3. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Baltz AG; Munschauer M; Schwanhäusser B; Vasile A; Murakawa Y; Schueler M; Youngs N; Penfold-Brown D; Drew K; Milek M; Wyler E; Bonneau R; Selbach M; Dieterich C; Landthaler M
Mol Cell; 2012 Jun; 46(5):674-90. PubMed ID: 22681889
[TBL] [Abstract][Full Text] [Related]
4. Transcriptome-wide high-throughput mapping of protein-RNA occupancy profiles using POP-seq.
Srivastava M; Srivastava R; Janga SC
Sci Rep; 2021 Jan; 11(1):1175. PubMed ID: 33441968
[TBL] [Abstract][Full Text] [Related]
5. Antagonistic and cooperative AGO2-PUM interactions in regulating mRNAs.
Sternburg EL; Estep JA; Nguyen DK; Li Y; Karginov FV
Sci Rep; 2018 Oct; 8(1):15316. PubMed ID: 30333515
[TBL] [Abstract][Full Text] [Related]
6. Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.
Brooks MJ; Rajasimha HK; Roger JE; Swaroop A
Mol Vis; 2011; 17():3034-54. PubMed ID: 22162623
[TBL] [Abstract][Full Text] [Related]
7. Global target mRNA specification and regulation by the RNA-binding protein ZFP36.
Mukherjee N; Jacobs NC; Hafner M; Kennington EA; Nusbaum JD; Tuschl T; Blackshear PJ; Ohler U
Genome Biol; 2014 Jan; 15(1):R12. PubMed ID: 24401661
[TBL] [Abstract][Full Text] [Related]
8. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
[TBL] [Abstract][Full Text] [Related]
9. Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae.
Freeberg MA; Han T; Moresco JJ; Kong A; Yang YC; Lu ZJ; Yates JR; Kim JK
Genome Biol; 2013 Feb; 14(2):R13. PubMed ID: 23409723
[TBL] [Abstract][Full Text] [Related]
10. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
11. CLIPdb: a CLIP-seq database for protein-RNA interactions.
Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ
BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745
[TBL] [Abstract][Full Text] [Related]
12. Global profiling of RNA-binding protein target sites by LACE-seq.
Su R; Fan LH; Cao C; Wang L; Du Z; Cai Z; Ouyang YC; Wang Y; Zhou Q; Wu L; Zhang N; Zhu X; Lei WL; Zhao H; Tian Y; He S; Wong CCL; Sun QY; Xue Y
Nat Cell Biol; 2021 Jun; 23(6):664-675. PubMed ID: 34108658
[TBL] [Abstract][Full Text] [Related]
13. Quantifying RNA binding sites transcriptome-wide using DO-RIP-seq.
Nicholson CO; Friedersdorf M; Keene JD
RNA; 2017 Jan; 23(1):32-46. PubMed ID: 27742911
[TBL] [Abstract][Full Text] [Related]
14. GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteins.
Zhu WS; Litterman AJ; Sekhon HS; Kageyama R; Arce MM; Taylor KE; Zhao W; Criswell LA; Zaitlen N; Erle DJ; Ansel KM
Genome Biol; 2023 Dec; 24(1):281. PubMed ID: 38062486
[TBL] [Abstract][Full Text] [Related]
15. DO-RIP-seq to quantify RNA binding sites transcriptome-wide.
Nicholson CO; Friedersdorf MB; Bisogno LS; Keene JD
Methods; 2017 Apr; 118-119():16-23. PubMed ID: 27840290
[TBL] [Abstract][Full Text] [Related]
16. PEPseq quantifies transcriptome-wide changes in protein occupancy and reveals selective translational repression after translational stress.
Trendel J; Boileau E; Jochem M; Dieterich C; Krijgsveld J
Nucleic Acids Res; 2023 Aug; 51(14):e79. PubMed ID: 37395449
[TBL] [Abstract][Full Text] [Related]
17. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Experimental Procedures.
Han T; Kim JK
Methods Mol Biol; 2016; 1361():77-90. PubMed ID: 26483017
[TBL] [Abstract][Full Text] [Related]
18. A Compendium of RNA-Binding Proteins that Regulate MicroRNA Biogenesis.
Treiber T; Treiber N; Plessmann U; Harlander S; Daiß JL; Eichner N; Lehmann G; Schall K; Urlaub H; Meister G
Mol Cell; 2017 Apr; 66(2):270-284.e13. PubMed ID: 28431233
[TBL] [Abstract][Full Text] [Related]
19. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Bioinformatic Analysis.
Freeberg MA; Kim JK
Methods Mol Biol; 2016; 1361():91-104. PubMed ID: 26483018
[TBL] [Abstract][Full Text] [Related]
20. Discovery of Allele-Specific Protein-RNA Interactions in Human Transcriptomes.
Bahrami-Samani E; Xing Y
Am J Hum Genet; 2019 Mar; 104(3):492-502. PubMed ID: 30827501
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]