144 related articles for article (PubMed ID: 24451229)
1. Estimation of viral richness from shotgun metagenomes using a frequency count approach.
Allen HK; Bunge J; Foster JA; Bayles DO; Stanton TB
Microbiome; 2013 Feb; 1(1):5. PubMed ID: 24451229
[TBL] [Abstract][Full Text] [Related]
2. PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.
Angly F; Rodriguez-Brito B; Bangor D; McNairnie P; Breitbart M; Salamon P; Felts B; Nulton J; Mahaffy J; Rohwer F
BMC Bioinformatics; 2005 Mar; 6():41. PubMed ID: 15743531
[TBL] [Abstract][Full Text] [Related]
3. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
Papudeshi B; Haggerty JM; Doane M; Morris MM; Walsh K; Beattie DT; Pande D; Zaeri P; Silva GGZ; Thompson F; Edwards RA; Dinsdale EA
BMC Genomics; 2017 Nov; 18(1):915. PubMed ID: 29183281
[TBL] [Abstract][Full Text] [Related]
4. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
Vázquez-Castellanos JF; García-López R; Pérez-Brocal V; Pignatelli M; Moya A
BMC Genomics; 2014 Jan; 15():37. PubMed ID: 24438450
[TBL] [Abstract][Full Text] [Related]
5. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
García-López R; Vázquez-Castellanos JF; Moya A
Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
[TBL] [Abstract][Full Text] [Related]
6. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
[TBL] [Abstract][Full Text] [Related]
7. Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures.
Pride DT; Schoenfeld T
BMC Genomics; 2008 Sep; 9():420. PubMed ID: 18798991
[TBL] [Abstract][Full Text] [Related]
8. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
[TBL] [Abstract][Full Text] [Related]
9. Evaluation of viral genome assembly and diversity estimation in deep metagenomes.
Aguirre de Cárcer D; Angly FE; Alcamí A
BMC Genomics; 2014 Nov; 15(1):989. PubMed ID: 25407630
[TBL] [Abstract][Full Text] [Related]
10. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
[TBL] [Abstract][Full Text] [Related]
11. Benchmarking viromics: an
Roux S; Emerson JB; Eloe-Fadrosh EA; Sullivan MB
PeerJ; 2017; 5():e3817. PubMed ID: 28948103
[TBL] [Abstract][Full Text] [Related]
12. Mining, analyzing, and integrating viral signals from metagenomic data.
Zheng T; Li J; Ni Y; Kang K; Misiakou MA; Imamovic L; Chow BKC; Rode AA; Bytzer P; Sommer M; Panagiotou G
Microbiome; 2019 Mar; 7(1):42. PubMed ID: 30890181
[TBL] [Abstract][Full Text] [Related]
13. RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes.
Zhang Y; Ji P; Wang J; Zhao F
Nucleic Acids Res; 2016 Jun; 44(10):e99. PubMed ID: 26984526
[TBL] [Abstract][Full Text] [Related]
14. Estimating and comparing microbial diversity in the presence of sequencing errors.
Chiu CH; Chao A
PeerJ; 2016; 4():e1634. PubMed ID: 26855872
[TBL] [Abstract][Full Text] [Related]
15. Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments.
Ruscheweyh HJ; Milanese A; Paoli L; Karcher N; Clayssen Q; Keller MI; Wirbel J; Bork P; Mende DR; Zeller G; Sunagawa S
Microbiome; 2022 Dec; 10(1):212. PubMed ID: 36464731
[TBL] [Abstract][Full Text] [Related]
16. Accurate reconstruction of viral quasispecies spectra through improved estimation of strain richness.
Jayasundara D; Saeed I; Chang BC; Tang SL; Halgamuge SK
BMC Bioinformatics; 2015; 16 Suppl 18(Suppl 18):S3. PubMed ID: 26678073
[TBL] [Abstract][Full Text] [Related]
17. Deduplication Improves Cost-Efficiency and Yields of
Zhang Z; Zhang L; Zhang G; Zhao Z; Wang H; Ju F
Microbiol Spectr; 2023 Feb; 11(2):e0428222. PubMed ID: 36744896
[TBL] [Abstract][Full Text] [Related]
18. Microbial Diversity and Phage-Host Interactions in the Georgian Coastal Area of the Black Sea Revealed by Whole Genome Metagenomic Sequencing.
Jaiani E; Kusradze I; Kokashvili T; Geliashvili N; Janelidze N; Kotorashvili A; Kotaria N; Guchmanidze A; Tediashvili M; Prangishvili D
Mar Drugs; 2020 Nov; 18(11):. PubMed ID: 33202695
[TBL] [Abstract][Full Text] [Related]
19. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
20. Estimating population diversity with CatchAll.
Bunge J; Woodard L; Böhning D; Foster JA; Connolly S; Allen HK
Bioinformatics; 2012 Apr; 28(7):1045-7. PubMed ID: 22333246
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]