543 related articles for article (PubMed ID: 24476892)
1. Landscape and variation of RNA secondary structure across the human transcriptome.
Wan Y; Qu K; Zhang QC; Flynn RA; Manor O; Ouyang Z; Zhang J; Spitale RC; Snyder MP; Segal E; Chang HY
Nature; 2014 Jan; 505(7485):706-9. PubMed ID: 24476892
[TBL] [Abstract][Full Text] [Related]
2. RNA secondary structure profiling in zebrafish reveals unique regulatory features.
Kaushik K; Sivadas A; Vellarikkal SK; Verma A; Jayarajan R; Pandey S; Sethi T; Maiti S; Scaria V; Sivasubbu S
BMC Genomics; 2018 Feb; 19(1):147. PubMed ID: 29448945
[TBL] [Abstract][Full Text] [Related]
3. Elucidation of transcriptome-wide microRNA binding sites in human cardiac tissues by Ago2 HITS-CLIP.
Spengler RM; Zhang X; Cheng C; McLendon JM; Skeie JM; Johnson FL; Davidson BL; Boudreau RL
Nucleic Acids Res; 2016 Sep; 44(15):7120-31. PubMed ID: 27418678
[TBL] [Abstract][Full Text] [Related]
4. Cryptic sequence features in the active postmortem transcriptome.
Noble PA; Pozhitkov AE
BMC Genomics; 2018 Sep; 19(1):675. PubMed ID: 30217147
[TBL] [Abstract][Full Text] [Related]
5. Genome-wide measurement of RNA folding energies.
Wan Y; Qu K; Ouyang Z; Kertesz M; Li J; Tibshirani R; Makino DL; Nutter RC; Segal E; Chang HY
Mol Cell; 2012 Oct; 48(2):169-81. PubMed ID: 22981864
[TBL] [Abstract][Full Text] [Related]
6. Structural imprints in vivo decode RNA regulatory mechanisms.
Spitale RC; Flynn RA; Zhang QC; Crisalli P; Lee B; Jung JW; Kuchelmeister HY; Batista PJ; Torre EA; Kool ET; Chang HY
Nature; 2015 Mar; 519(7544):486-90. PubMed ID: 25799993
[TBL] [Abstract][Full Text] [Related]
7. Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms.
Chang TC; Pertea M; Lee S; Salzberg SL; Mendell JT
Genome Res; 2015 Sep; 25(9):1401-9. PubMed ID: 26290535
[TBL] [Abstract][Full Text] [Related]
8. Structural effects of linkage disequilibrium on the transcriptome.
Martin JS; Halvorsen M; Davis-Neulander L; Ritz J; Gopinath C; Beauregard A; Laederach A
RNA; 2012 Jan; 18(1):77-87. PubMed ID: 22109839
[TBL] [Abstract][Full Text] [Related]
9. A systematic analysis of disease-associated variants in the 3' regulatory regions of human protein-coding genes II: the importance of mRNA secondary structure in assessing the functionality of 3' UTR variants.
Chen JM; Férec C; Cooper DN
Hum Genet; 2006 Oct; 120(3):301-33. PubMed ID: 16807757
[TBL] [Abstract][Full Text] [Related]
10. RBP-Var: a database of functional variants involved in regulation mediated by RNA-binding proteins.
Mao F; Xiao L; Li X; Liang J; Teng H; Cai W; Sun ZS
Nucleic Acids Res; 2016 Jan; 44(D1):D154-63. PubMed ID: 26635394
[TBL] [Abstract][Full Text] [Related]
11. Widespread splicing of repetitive element loci into coding regions of gene transcripts.
Darby MM; Leek JT; Langmead B; Yolken RH; Sabunciyan S
Hum Mol Genet; 2016 Nov; 25(22):4962-4982. PubMed ID: 28171598
[TBL] [Abstract][Full Text] [Related]
12. De novo computational identification of stress-related sequence motifs and microRNA target sites in untranslated regions of a plant translatome.
Munusamy P; Zolotarov Y; Meteignier LV; Moffett P; Strömvik MV
Sci Rep; 2017 Mar; 7():43861. PubMed ID: 28276452
[TBL] [Abstract][Full Text] [Related]
13. The RNA-Binding Protein A1CF Regulates Hepatic Fructose and Glycerol Metabolism via Alternative RNA Splicing.
Nikolaou KC; Vatandaslar H; Meyer C; Schmid MW; Tuschl T; Stoffel M
Cell Rep; 2019 Oct; 29(2):283-300.e8. PubMed ID: 31597092
[TBL] [Abstract][Full Text] [Related]
14. The regulatory impact of RNA-binding proteins on microRNA targeting.
Kim S; Kim S; Chang HR; Kim D; Park J; Son N; Park J; Yoon M; Chae G; Kim YK; Kim VN; Kim YK; Nam JW; Shin C; Baek D
Nat Commun; 2021 Aug; 12(1):5057. PubMed ID: 34417449
[TBL] [Abstract][Full Text] [Related]
15. Alternative promoter use and splice variation in the human histamine H1 receptor gene.
Swan C; Richards SA; Duroudier NP; Sayers I; Hall IP
Am J Respir Cell Mol Biol; 2006 Jul; 35(1):118-26. PubMed ID: 16484687
[TBL] [Abstract][Full Text] [Related]
16. Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.
Lin MF; Kheradpour P; Washietl S; Parker BJ; Pedersen JS; Kellis M
Genome Res; 2011 Nov; 21(11):1916-28. PubMed ID: 21994248
[TBL] [Abstract][Full Text] [Related]
17. Post-transcriptional 3´-UTR cleavage of mRNA transcripts generates thousands of stable uncapped autonomous RNA fragments.
Malka Y; Steiman-Shimony A; Rosenthal E; Argaman L; Cohen-Daniel L; Arbib E; Margalit H; Kaplan T; Berger M
Nat Commun; 2017 Dec; 8(1):2029. PubMed ID: 29229900
[TBL] [Abstract][Full Text] [Related]
18. Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq.
Laass S; Monzon VA; Kliemt J; Hammelmann M; Pfeiffer F; Förstner KU; Soppa J
PLoS One; 2019; 14(4):e0215986. PubMed ID: 31039177
[TBL] [Abstract][Full Text] [Related]
19. Functional conservation of both CDS- and 3'-UTR-located microRNA binding sites between species.
Liu G; Zhang R; Xu J; Wu CI; Lu X
Mol Biol Evol; 2015 Mar; 32(3):623-8. PubMed ID: 25414126
[TBL] [Abstract][Full Text] [Related]
20. The code within the code: microRNAs target coding regions.
Forman JJ; Coller HA
Cell Cycle; 2010 Apr; 9(8):1533-41. PubMed ID: 20372064
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
