449 related articles for article (PubMed ID: 24484323)
1. Inferring clonal evolution of tumors from single nucleotide somatic mutations.
Jiao W; Vembu S; Deshwar AG; Stein L; Morris Q
BMC Bioinformatics; 2014 Feb; 15():35. PubMed ID: 24484323
[TBL] [Abstract][Full Text] [Related]
2. BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples.
Toosi H; Moeini A; Hajirasouliha I
BMC Bioinformatics; 2019 Jun; 20(Suppl 11):282. PubMed ID: 31167637
[TBL] [Abstract][Full Text] [Related]
3. TargetClone: A multi-sample approach for reconstructing subclonal evolution of tumors.
Nieboer MM; Dorssers LCJ; Straver R; Looijenga LHJ; de Ridder J
PLoS One; 2018; 13(11):e0208002. PubMed ID: 30496231
[TBL] [Abstract][Full Text] [Related]
4. Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine.
Sundermann LK; Wintersinger J; Rätsch G; Stoye J; Morris Q
PLoS Comput Biol; 2021 Jan; 17(1):e1008400. PubMed ID: 33465079
[TBL] [Abstract][Full Text] [Related]
5. Comparing nonparametric Bayesian tree priors for clonal reconstruction of tumors.
Deshwar AG; Vembu S; Morris Q
Pac Symp Biocomput; 2015; ():20-31. PubMed ID: 25592565
[TBL] [Abstract][Full Text] [Related]
6. Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing.
Jiang Y; Qiu Y; Minn AJ; Zhang NR
Proc Natl Acad Sci U S A; 2016 Sep; 113(37):E5528-37. PubMed ID: 27573852
[TBL] [Abstract][Full Text] [Related]
7. MixClone: a mixture model for inferring tumor subclonal populations.
Li Y; Xie X
BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S1. PubMed ID: 25707430
[TBL] [Abstract][Full Text] [Related]
8. Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data.
Malikic S; Jahn K; Kuipers J; Sahinalp SC; Beerenwinkel N
Nat Commun; 2019 Jun; 10(1):2750. PubMed ID: 31227714
[TBL] [Abstract][Full Text] [Related]
9. SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing.
Niknafs N; Beleva-Guthrie V; Naiman DQ; Karchin R
PLoS Comput Biol; 2015 Oct; 11(10):e1004416. PubMed ID: 26436540
[TBL] [Abstract][Full Text] [Related]
10. A BAYESIAN NONPARAMETRIC MODEL FOR RECONSTRUCTING TUMOR SUBCLONES BASED ON MUTATION PAIRS.
Sengupta S; Zhou T; Müeller P; Ji Y
Pac Symp Biocomput; 2016; 21():393-404. PubMed ID: 26776203
[TBL] [Abstract][Full Text] [Related]
11. Principles of Reconstructing the Subclonal Architecture of Cancers.
Dentro SC; Wedge DC; Van Loo P
Cold Spring Harb Perspect Med; 2017 Aug; 7(8):. PubMed ID: 28270531
[TBL] [Abstract][Full Text] [Related]
12. BiTSC 2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data.
Chen Z; Gong F; Wan L; Ma L
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35368055
[TBL] [Abstract][Full Text] [Related]
13. SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses.
Satas G; Zaccaria S; Mon G; Raphael BJ
Cell Syst; 2020 Apr; 10(4):323-332.e8. PubMed ID: 32864481
[TBL] [Abstract][Full Text] [Related]
14. SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.
Rozhoňová H; Danciu D; Stark S; Rätsch G; Kahles A; Lehmann KV
Bioinformatics; 2022 Sep; 38(18):4293-4300. PubMed ID: 35900151
[TBL] [Abstract][Full Text] [Related]
15. Parameter, noise, and tree topology effects in tumor phylogeny inference.
Tomlinson K; Oesper L
BMC Med Genomics; 2019 Dec; 12(Suppl 10):184. PubMed ID: 31865909
[TBL] [Abstract][Full Text] [Related]
16. CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data.
Yu Z; Li A; Wang M
BMC Med Genomics; 2017 Mar; 10(1):15. PubMed ID: 28298214
[TBL] [Abstract][Full Text] [Related]
17. OncoNEM: inferring tumor evolution from single-cell sequencing data.
Ross EM; Markowetz F
Genome Biol; 2016 Apr; 17():69. PubMed ID: 27083415
[TBL] [Abstract][Full Text] [Related]
18. Fast and scalable inference of multi-sample cancer lineages.
Popic V; Salari R; Hajirasouliha I; Kashef-Haghighi D; West RB; Batzoglou S
Genome Biol; 2015 May; 16(1):91. PubMed ID: 25944252
[TBL] [Abstract][Full Text] [Related]
19. PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors.
Deshwar AG; Vembu S; Yung CK; Jang GH; Stein L; Morris Q
Genome Biol; 2015 Feb; 16(1):35. PubMed ID: 25786235
[TBL] [Abstract][Full Text] [Related]
20. Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data.
Donmez N; Malikic S; Wyatt AW; Gleave ME; Collins CC; Sahinalp SC
J Comput Biol; 2017 Jun; 24(6):515-523. PubMed ID: 28056180
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
