570 related articles for article (PubMed ID: 24503186)
1. CoreFlow: a computational platform for integration, analysis and modeling of complex biological data.
Pasculescu A; Schoof EM; Creixell P; Zheng Y; Olhovsky M; Tian R; So J; Vanderlaan RD; Pawson T; Linding R; Colwill K
J Proteomics; 2014 Apr; 100():167-73. PubMed ID: 24503186
[TBL] [Abstract][Full Text] [Related]
2. PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments.
Mohammed Y; Domański D; Jackson AM; Smith DS; Deelder AM; Palmblad M; Borchers CH
J Proteomics; 2014 Jun; 106():151-61. PubMed ID: 24769191
[TBL] [Abstract][Full Text] [Related]
3. DolphinNext: a distributed data processing platform for high throughput genomics.
Yukselen O; Turkyilmaz O; Ozturk AR; Garber M; Kucukural A
BMC Genomics; 2020 Apr; 21(1):310. PubMed ID: 32306927
[TBL] [Abstract][Full Text] [Related]
4. multiplierz: an extensible API based desktop environment for proteomics data analysis.
Parikh JR; Askenazi M; Ficarro SB; Cashorali T; Webber JT; Blank NC; Zhang Y; Marto JA
BMC Bioinformatics; 2009 Oct; 10():364. PubMed ID: 19874609
[TBL] [Abstract][Full Text] [Related]
5. ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.
Brusniak MY; Kwok ST; Christiansen M; Campbell D; Reiter L; Picotti P; Kusebauch U; Ramos H; Deutsch EW; Chen J; Moritz RL; Aebersold R
BMC Bioinformatics; 2011 Mar; 12():78. PubMed ID: 21414234
[TBL] [Abstract][Full Text] [Related]
6. Script of Scripts: A pragmatic workflow system for daily computational research.
Wang G; Peng B
PLoS Comput Biol; 2019 Feb; 15(2):e1006843. PubMed ID: 30811390
[TBL] [Abstract][Full Text] [Related]
7. A graph-based approach for designing extensible pipelines.
Rodrigues MR; Magalhães WC; Machado M; Tarazona-Santos E
BMC Bioinformatics; 2012 Jul; 13():163. PubMed ID: 22788675
[TBL] [Abstract][Full Text] [Related]
8. Constructing computational pipelines.
Halling-Brown M; Shepherd AJ
Methods Mol Biol; 2008; 453():451-70. PubMed ID: 18712319
[TBL] [Abstract][Full Text] [Related]
9. Workflows for microarray data processing in the Kepler environment.
Stropp T; McPhillips T; Ludäscher B; Bieda M
BMC Bioinformatics; 2012 May; 13():102. PubMed ID: 22594911
[TBL] [Abstract][Full Text] [Related]
10. Scientific workflow optimization for improved peptide and protein identification.
Holl S; Mohammed Y; Zimmermann O; Palmblad M
BMC Bioinformatics; 2015 Sep; 16(1):284. PubMed ID: 26335531
[TBL] [Abstract][Full Text] [Related]
11. Expanding the Perseus Software for Omics Data Analysis With Custom Plugins.
Yu SH; Ferretti D; Schessner JP; Rudolph JD; Borner GHH; Cox J
Curr Protoc Bioinformatics; 2020 Sep; 71(1):e105. PubMed ID: 32931150
[TBL] [Abstract][Full Text] [Related]
12. JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.
Latorre M; Silva H; Saba J; Guziolowski C; Vizoso P; Martinez V; Maldonado J; Morales A; Caroca R; Cambiazo V; Campos-Vargas R; Gonzalez M; Orellana A; Retamales J; Meisel LA
BMC Bioinformatics; 2006 Nov; 7():513. PubMed ID: 17123449
[TBL] [Abstract][Full Text] [Related]
13. The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.
Swertz MA; Dijkstra M; Adamusiak T; van der Velde JK; Kanterakis A; Roos ET; Lops J; Thorisson GA; Arends D; Byelas G; Muilu J; Brookes AJ; de Brock EO; Jansen RC; Parkinson H
BMC Bioinformatics; 2010 Dec; 11 Suppl 12(Suppl 12):S12. PubMed ID: 21210979
[TBL] [Abstract][Full Text] [Related]
14. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
15. OpenMS: a flexible open-source software platform for mass spectrometry data analysis.
Röst HL; Sachsenberg T; Aiche S; Bielow C; Weisser H; Aicheler F; Andreotti S; Ehrlich HC; Gutenbrunner P; Kenar E; Liang X; Nahnsen S; Nilse L; Pfeuffer J; Rosenberger G; Rurik M; Schmitt U; Veit J; Walzer M; Wojnar D; Wolski WE; Schilling O; Choudhary JS; Malmström L; Aebersold R; Reinert K; Kohlbacher O
Nat Methods; 2016 Aug; 13(9):741-8. PubMed ID: 27575624
[TBL] [Abstract][Full Text] [Related]
16. Experimental design and data-analysis in label-free quantitative LC/MS proteomics: A tutorial with MSqRob.
Goeminne LJE; Gevaert K; Clement L
J Proteomics; 2018 Jan; 171():23-36. PubMed ID: 28391044
[TBL] [Abstract][Full Text] [Related]
17. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Brusniak MY; Bodenmiller B; Campbell D; Cooke K; Eddes J; Garbutt A; Lau H; Letarte S; Mueller LN; Sharma V; Vitek O; Zhang N; Aebersold R; Watts JD
BMC Bioinformatics; 2008 Dec; 9():542. PubMed ID: 19087345
[TBL] [Abstract][Full Text] [Related]
18. Watchdog - a workflow management system for the distributed analysis of large-scale experimental data.
Kluge M; Friedel CC
BMC Bioinformatics; 2018 Mar; 19(1):97. PubMed ID: 29534677
[TBL] [Abstract][Full Text] [Related]
19. Pyteomics 4.0: Five Years of Development of a Python Proteomics Framework.
Levitsky LI; Klein JA; Ivanov MV; Gorshkov MV
J Proteome Res; 2019 Feb; 18(2):709-714. PubMed ID: 30576148
[TBL] [Abstract][Full Text] [Related]
20. 2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments.
Allmer J; Kuhlgert S; Hippler M
BMC Bioinformatics; 2008 Jul; 9():302. PubMed ID: 18605993
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
