1047 related articles for article (PubMed ID: 24505072)
1. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes.
Kim M; Oh HS; Park SC; Chun J
Int J Syst Evol Microbiol; 2014 Feb; 64(Pt 2):346-351. PubMed ID: 24505072
[TBL] [Abstract][Full Text] [Related]
2. EzBioCloud: a genome-driven database and platform for microbiome identification and discovery.
Chalita M; Kim YO; Park S; Oh HS; Cho JH; Moon J; Baek N; Moon C; Lee K; Yang J; Nam GG; Jung Y; Na SI; Bailey MJ; Chun J
Int J Syst Evol Microbiol; 2024 Jun; 74(6):. PubMed ID: 38888585
[TBL] [Abstract][Full Text] [Related]
3. Genome sequence-based species delimitation with confidence intervals and improved distance functions.
Meier-Kolthoff JP; Auch AF; Klenk HP; Göker M
BMC Bioinformatics; 2013 Feb; 14():60. PubMed ID: 23432962
[TBL] [Abstract][Full Text] [Related]
4. A New Genomics-Driven Taxonomy of Bacteria and Archaea: Are We There Yet?
Garrity GM
J Clin Microbiol; 2016 Aug; 54(8):1956-63. PubMed ID: 27194687
[TBL] [Abstract][Full Text] [Related]
5. CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy.
Zuo G; Hao B
Genomics Proteomics Bioinformatics; 2015 Oct; 13(5):321-31. PubMed ID: 26563468
[TBL] [Abstract][Full Text] [Related]
6. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.
Jain C; Rodriguez-R LM; Phillippy AM; Konstantinidis KT; Aluru S
Nat Commun; 2018 Nov; 9(1):5114. PubMed ID: 30504855
[TBL] [Abstract][Full Text] [Related]
7. Augmenting Bacterial Similarity Measures Using a Graph-Based Genome Representation.
Ramanan V; Sarkar IN
bioRxiv; 2024 Apr; ():. PubMed ID: 38645008
[TBL] [Abstract][Full Text] [Related]
8. A fast comparative genome browser for diverse bacteria and archaea.
Price MN; Arkin AP
PLoS One; 2024; 19(4):e0301871. PubMed ID: 38593165
[TBL] [Abstract][Full Text] [Related]
9. Augmenting bacterial similarity measures using a graph-based genome representation.
Ramanan V; Sarkar IN
mSystems; 2024 Jun; ():e0049724. PubMed ID: 38940518
[TBL] [Abstract][Full Text] [Related]
10. Strategies for high-altitude adaptation revealed from high-quality draft genome of non-violacein producing
Kumar R; Acharya V; Singh D; Kumar S
Stand Genomic Sci; 2018; 13():11. PubMed ID: 29721151
[TBL] [Abstract][Full Text] [Related]
11. On the road to genomically defining bacterial intra-species units.
Castillo-Ramírez S
mSystems; 2024 Jun; ():e0058424. PubMed ID: 38940600
[TBL] [Abstract][Full Text] [Related]
12. Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach.
Sun J; Xu Z; Hao B
Chin Sci Bull; 2010; 55(22):2323-2328. PubMed ID: 32214732
[TBL] [Abstract][Full Text] [Related]
13. Sequence-discrete species for prokaryotes and other microbes: A historical perspective and pending issues.
Konstantinidis KT
mLife; 2023 Dec; 2(4):341-349. PubMed ID: 38818268
[TBL] [Abstract][Full Text] [Related]
14. Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs.
Auch AF; Klenk HP; Göker M
Stand Genomic Sci; 2010 Jan; 2(1):142-8. PubMed ID: 21304686
[TBL] [Abstract][Full Text] [Related]
15. OrthoANI: An improved algorithm and software for calculating average nucleotide identity.
Lee I; Ouk Kim Y; Park SC; Chun J
Int J Syst Evol Microbiol; 2016 Feb; 66(2):1100-1103. PubMed ID: 26585518
[TBL] [Abstract][Full Text] [Related]
16. A large-scale evaluation of algorithms to calculate average nucleotide identity.
Yoon SH; Ha SM; Lim J; Kwon S; Chun J
Antonie Van Leeuwenhoek; 2017 Oct; 110(10):1281-1286. PubMed ID: 28204908
[TBL] [Abstract][Full Text] [Related]
17. Whole-genome sequence comparison as a method for improving bacterial species definition.
Zhang W; Du P; Zheng H; Yu W; Wan L; Chen C
J Gen Appl Microbiol; 2014; 60(2):75-8. PubMed ID: 24859865
[TBL] [Abstract][Full Text] [Related]
18. Microbial species delineation using whole genome sequences.
Varghese NJ; Mukherjee S; Ivanova N; Konstantinidis KT; Mavrommatis K; Kyrpides NC; Pati A
Nucleic Acids Res; 2015 Aug; 43(14):6761-71. PubMed ID: 26150420
[TBL] [Abstract][Full Text] [Related]
19. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.
Yarza P; Yilmaz P; Pruesse E; Glöckner FO; Ludwig W; Schleifer KH; Whitman WB; Euzéby J; Amann R; Rosselló-Móra R
Nat Rev Microbiol; 2014 Sep; 12(9):635-45. PubMed ID: 25118885
[TBL] [Abstract][Full Text] [Related]
20. Microbial taxonomy in the post-genomic era: rebuilding from scratch?
Thompson CC; Amaral GR; Campeão M; Edwards RA; Polz MF; Dutilh BE; Ussery DW; Sawabe T; Swings J; Thompson FL
Arch Microbiol; 2015 Apr; 197(3):359-70. PubMed ID: 25533848
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
