235 related articles for article (PubMed ID: 24510800)
1. Molecular modeling of nucleic acid structure: energy and sampling.
Bergonzo C; Galindo-Murillo R; Cheatham TE
Curr Protoc Nucleic Acid Chem; 2013 Oct; 54():7.8.1-7.8.21. PubMed ID: 24510800
[TBL] [Abstract][Full Text] [Related]
2. Molecular modeling of nucleic acid structure: energy and sampling.
Cheatham TE; Brooks BR; Kollman PA
Curr Protoc Nucleic Acid Chem; 2001 May; Chapter 7():Unit 7.8. PubMed ID: 18428876
[TBL] [Abstract][Full Text] [Related]
3. Molecular modeling of nucleic acid structure.
Galindo-Murillo R; Bergonzo C; Cheatham TE
Curr Protoc Nucleic Acid Chem; 2013 Oct; 54():7.5.1-7.5.13. PubMed ID: 24510799
[TBL] [Abstract][Full Text] [Related]
4. Molecular modeling of nucleic Acid structure: electrostatics and solvation.
Bergonzo C; Galindo-Murillo R; Cheatham TE
Curr Protoc Nucleic Acid Chem; 2014 Dec; 55():7.9.1-27. PubMed ID: 25631536
[TBL] [Abstract][Full Text] [Related]
5. Molecular modeling of nucleic acid structure: electrostatics and solvation.
Cheatham TE; Brooks BR; Kollman PA
Curr Protoc Nucleic Acid Chem; 2001 Aug; Chapter 7():Unit 7.9. PubMed ID: 18428877
[TBL] [Abstract][Full Text] [Related]
6. Molecular dynamics simulation of nucleic acids: successes, limitations, and promise.
Cheatham TE; Young MA
Biopolymers; 2000-2001; 56(4):232-56. PubMed ID: 11754338
[TBL] [Abstract][Full Text] [Related]
7. Molecular modeling of nucleic acid structure: setup and analysis.
Cheatham TE; Brooks BR; Kollman PA
Curr Protoc Nucleic Acid Chem; 2001 Nov; Chapter 7():Unit 7.10. PubMed ID: 18428869
[TBL] [Abstract][Full Text] [Related]
8. Molecular modeling of nucleic Acid structure: setup and analysis.
Galindo-Murillo R; Bergonzo C; Cheatham TE
Curr Protoc Nucleic Acid Chem; 2014 Mar; 56():7.10.1-21. PubMed ID: 25606980
[TBL] [Abstract][Full Text] [Related]
9. Empirical force fields for biological macromolecules: overview and issues.
Mackerell AD
J Comput Chem; 2004 Oct; 25(13):1584-604. PubMed ID: 15264253
[TBL] [Abstract][Full Text] [Related]
10. Molecular modeling of nucleic acid structure.
Cheatham TE; Brooks BR; Kollman PA
Curr Protoc Nucleic Acid Chem; 2001 Nov; Chapter 7():Unit 7.5. PubMed ID: 18428873
[TBL] [Abstract][Full Text] [Related]
11. Theoretical methods for the simulation of nucleic acids.
Orozco M; Pérez A; Noy A; Luque FJ
Chem Soc Rev; 2003 Nov; 32(6):350-64. PubMed ID: 14671790
[TBL] [Abstract][Full Text] [Related]
12. Simulations of the molecular dynamics of nucleic acids.
Auffinger P; Westhof E
Curr Opin Struct Biol; 1998 Apr; 8(2):227-36. PubMed ID: 9631298
[TBL] [Abstract][Full Text] [Related]
13. Aromatic Base Stacking in DNA: From ab initio Calculations to Molecular Dynamics Simulations.
Sponer J; Berger I; Spačková N; Leszczynski J; Hobza P
J Biomol Struct Dyn; 2000; 17 Suppl 1():1-24. PubMed ID: 22607400
[TBL] [Abstract][Full Text] [Related]
14. PNA-nucleic acid complexes. Structure, stability and dynamics.
Eriksson M; Nielsen PE
Q Rev Biophys; 1996 Dec; 29(4):369-94. PubMed ID: 9080548
[No Abstract] [Full Text] [Related]
15. An analysis of the electrostatic interaction between nucleic acid bases.
Toczyłowski RR; Cybulski SM
J Chem Phys; 2005 Oct; 123(15):154312. PubMed ID: 16252953
[TBL] [Abstract][Full Text] [Related]
16. Comparison of mode analyses at different resolutions applied to nucleic acid systems.
Van Wynsberghe AW; Cui Q
Biophys J; 2005 Nov; 89(5):2939-49. PubMed ID: 16100266
[TBL] [Abstract][Full Text] [Related]
17. Development and current status of the CHARMM force field for nucleic acids.
MacKerell AD; Banavali N; Foloppe N
Biopolymers; 2000-2001; 56(4):257-65. PubMed ID: 11754339
[TBL] [Abstract][Full Text] [Related]
18. Data mining of molecular dynamics trajectories of nucleic acids.
Noy A; Meyer T; Rueda M; Ferrer C; Valencia A; Pérez A; de la Cruz X; López-Bes JM; Pouplana R; Fernandez-Recio J; Luque FJ; Orozco M
J Biomol Struct Dyn; 2006 Feb; 23(4):447-56. PubMed ID: 16363879
[TBL] [Abstract][Full Text] [Related]
19. Recent developments in empirical atomistic force fields for nucleic acids and applications to studies of folding and dynamics.
Salsbury AM; Lemkul JA
Curr Opin Struct Biol; 2021 Apr; 67():9-17. PubMed ID: 32950937
[TBL] [Abstract][Full Text] [Related]
20. Nucleic acid based molecular devices.
Krishnan Y; Simmel FC
Angew Chem Int Ed Engl; 2011 Mar; 50(14):3124-56. PubMed ID: 21432950
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
