170 related articles for article (PubMed ID: 24511902)
1. Optimal and variant metal-ion routes in DNA polymerase β's conformational pathways.
Li Y; Freudenthal BD; Beard WA; Wilson SH; Schlick T
J Am Chem Soc; 2014 Mar; 136(9):3630-9. PubMed ID: 24511902
[TBL] [Abstract][Full Text] [Related]
2. Unfavorable electrostatic and steric interactions in DNA polymerase β E295K mutant interfere with the enzyme's pathway.
Li Y; Gridley CL; Jaeger J; Sweasy JB; Schlick T
J Am Chem Soc; 2012 Jun; 134(24):9999-10010. PubMed ID: 22651551
[TBL] [Abstract][Full Text] [Related]
3. Critical role of magnesium ions in DNA polymerase beta's closing and active site assembly.
Yang L; Arora K; Beard WA; Wilson SH; Schlick T
J Am Chem Soc; 2004 Jul; 126(27):8441-53. PubMed ID: 15238001
[TBL] [Abstract][Full Text] [Related]
4. Conformational transition pathway of polymerase beta/DNA upon binding correct incoming substrate.
Arora K; Schlick T
J Phys Chem B; 2005 Mar; 109(11):5358-67. PubMed ID: 16863202
[TBL] [Abstract][Full Text] [Related]
5. Mismatch-induced conformational distortions in polymerase beta support an induced-fit mechanism for fidelity.
Arora K; Beard WA; Wilson SH; Schlick T
Biochemistry; 2005 Oct; 44(40):13328-41. PubMed ID: 16201758
[TBL] [Abstract][Full Text] [Related]
6. Regulation of DNA repair fidelity by molecular checkpoints: "gates" in DNA polymerase beta's substrate selection.
Radhakrishnan R; Arora K; Wang Y; Beard WA; Wilson SH; Schlick T
Biochemistry; 2006 Dec; 45(51):15142-56. PubMed ID: 17176036
[TBL] [Abstract][Full Text] [Related]
7. In silico evidence for DNA polymerase-beta's substrate-induced conformational change.
Arora K; Schlick T
Biophys J; 2004 Nov; 87(5):3088-99. PubMed ID: 15507687
[TBL] [Abstract][Full Text] [Related]
8. Distinct energetics and closing pathways for DNA polymerase beta with 8-oxoG template and different incoming nucleotides.
Wang Y; Schlick T
BMC Struct Biol; 2007 Feb; 7():7. PubMed ID: 17313689
[TBL] [Abstract][Full Text] [Related]
9. Fidelity discrimination in DNA polymerase beta: differing closing profiles for a mismatched (G:A) versus matched (G:C) base pair.
Radhakrishnan R; Schlick T
J Am Chem Soc; 2005 Sep; 127(38):13245-52. PubMed ID: 16173754
[TBL] [Abstract][Full Text] [Related]
10. Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes.
Arndt JW; Gong W; Zhong X; Showalter AK; Liu J; Dunlap CA; Lin Z; Paxson C; Tsai MD; Chan MK
Biochemistry; 2001 May; 40(18):5368-75. PubMed ID: 11330999
[TBL] [Abstract][Full Text] [Related]
11. Local deformations revealed by dynamics simulations of DNA polymerase Beta with DNA mismatches at the primer terminus.
Yang L; Beard W; Wilson S; Roux B; Broyde S; Schlick T
J Mol Biol; 2002 Aug; 321(3):459-78. PubMed ID: 12162959
[TBL] [Abstract][Full Text] [Related]
12. Polymerase beta simulations suggest that Arg258 rotation is a slow step rather than large subdomain motions per se.
Yang L; Beard WA; Wilson SH; Broyde S; Schlick T
J Mol Biol; 2002 Apr; 317(5):651-71. PubMed ID: 11955015
[TBL] [Abstract][Full Text] [Related]
13. Sequential side-chain residue motions transform the binary into the ternary state of DNA polymerase lambda.
Foley MC; Arora K; Schlick T
Biophys J; 2006 Nov; 91(9):3182-95. PubMed ID: 16920835
[TBL] [Abstract][Full Text] [Related]
14. A quantum mechanical investigation of possible mechanisms for the nucleotidyl transfer reaction catalyzed by DNA polymerase beta.
Bojin MD; Schlick T
J Phys Chem B; 2007 Sep; 111(38):11244-52. PubMed ID: 17764165
[TBL] [Abstract][Full Text] [Related]
15. Orchestration of cooperative events in DNA synthesis and repair mechanism unraveled by transition path sampling of DNA polymerase beta's closing.
Radhakrishnan R; Schlick T
Proc Natl Acad Sci U S A; 2004 Apr; 101(16):5970-5. PubMed ID: 15069184
[TBL] [Abstract][Full Text] [Related]
16. DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase beta. Implication for the identity of the rate-limiting conformational change.
Vande Berg BJ; Beard WA; Wilson SH
J Biol Chem; 2001 Feb; 276(5):3408-16. PubMed ID: 11024043
[TBL] [Abstract][Full Text] [Related]
17. Defective Nucleotide Release by DNA Polymerase β Mutator Variant E288K Is the Basis of Its Low Fidelity.
Mahmoud MM; Schechter A; Alnajjar KS; Huang J; Towle-Weicksel J; Eckenroth BE; Doublié S; Sweasy JB
Biochemistry; 2017 Oct; 56(41):5550-5559. PubMed ID: 28945359
[TBL] [Abstract][Full Text] [Related]
18. Differing conformational pathways before and after chemistry for insertion of dATP versus dCTP opposite 8-oxoG in DNA polymerase beta.
Wang Y; Reddy S; Beard WA; Wilson SH; Schlick T
Biophys J; 2007 May; 92(9):3063-70. PubMed ID: 17293403
[TBL] [Abstract][Full Text] [Related]
19. A DNA polymerase beta mutator mutant with reduced nucleotide discrimination and increased protein stability.
Shah AM; Conn DA; Li SX; Capaldi A; Jäger J; Sweasy JB
Biochemistry; 2001 Sep; 40(38):11372-81. PubMed ID: 11560485
[TBL] [Abstract][Full Text] [Related]
20. Rat polymerase beta binds double-stranded DNA using exclusively the 8-kDa domain. Stoichiometries, intrinsic affinities, and cooperativities.
Jezewska MJ; Galletto R; Bujalowski W
Biochemistry; 2003 May; 42(19):5955-70. PubMed ID: 12741854
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]