These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

396 related articles for article (PubMed ID: 24511929)

  • 1. Adaptive resolution simulation of an atomistic protein in MARTINI water.
    Zavadlav J; Melo MN; Marrink SJ; Praprotnik M
    J Chem Phys; 2014 Feb; 140(5):054114. PubMed ID: 24511929
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Adaptive resolution simulations of biomolecular systems.
    Zavadlav J; Bevc S; Praprotnik M
    Eur Biophys J; 2017 Dec; 46(8):821-835. PubMed ID: 28905203
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Adaptive Resolution Simulation of MARTINI Solvents.
    Zavadlav J; Melo MN; Cunha AV; de Vries AH; Marrink SJ; Praprotnik M
    J Chem Theory Comput; 2014 Jun; 10(6):2591-8. PubMed ID: 26580779
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Mixing MARTINI: electrostatic coupling in hybrid atomistic-coarse-grained biomolecular simulations.
    Wassenaar TA; Ingólfsson HI; Priess M; Marrink SJ; Schäfer LV
    J Phys Chem B; 2013 Apr; 117(13):3516-30. PubMed ID: 23406326
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Adaptive resolution simulation of polarizable supramolecular coarse-grained water models.
    Zavadlav J; Melo MN; Marrink SJ; Praprotnik M
    J Chem Phys; 2015 Jun; 142(24):244118. PubMed ID: 26133421
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites.
    Rzepiela AJ; Louhivuori M; Peter C; Marrink SJ
    Phys Chem Chem Phys; 2011 Jun; 13(22):10437-48. PubMed ID: 21494747
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Multiscale Simulation of Protein Hydration Using the SWINGER Dynamical Clustering Algorithm.
    Zavadlav J; Marrink SJ; Praprotnik M
    J Chem Theory Comput; 2018 Mar; 14(3):1754-1761. PubMed ID: 29439560
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Adaptive Resolution Simulation of Supramolecular Water: The Concurrent Making, Breaking, and Remaking of Water Bundles.
    Zavadlav J; Marrink SJ; Praprotnik M
    J Chem Theory Comput; 2016 Aug; 12(8):4138-45. PubMed ID: 27409519
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Adaptive resolution simulation of a DNA molecule in salt solution.
    Zavadlav J; Podgornik R; Praprotnik M
    J Chem Theory Comput; 2015 Oct; 11(10):5035-44. PubMed ID: 26574288
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Adaptive resolution simulation of a biomolecule and its hydration shell: Structural and dynamical properties.
    Fogarty AC; Potestio R; Kremer K
    J Chem Phys; 2015 May; 142(19):195101. PubMed ID: 26001481
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multiscale Simulation of Liquid Water Using a Four-to-One Mapping for Coarse-Graining.
    Nagarajan A; Junghans C; Matysiak S
    J Chem Theory Comput; 2013 Nov; 9(11):5168-75. PubMed ID: 26583426
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multiscale simulation of small peptides: consistent conformational sampling in atomistic and coarse-grained models.
    Bezkorovaynaya O; Lukyanov A; Kremer K; Peter C
    J Comput Chem; 2012 Apr; 33(9):937-49. PubMed ID: 22298285
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Hybrid Atomistic and Coarse-Grained Molecular Dynamics Simulations of Polyethylene Glycol (PEG) in Explicit Water.
    Stanzione F; Jayaraman A
    J Phys Chem B; 2016 May; 120(17):4160-73. PubMed ID: 27108869
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Adaptive resolution molecular-dynamics simulation: changing the degrees of freedom on the fly.
    Praprotnik M; Delle Site L; Kremer K
    J Chem Phys; 2005 Dec; 123(22):224106. PubMed ID: 16375469
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The CUMULUS coarse graining method: transferable potentials for water and solutes.
    van Hoof B; Markvoort AJ; van Santen RA; Hilbers PA
    J Phys Chem B; 2011 Aug; 115(33):10001-12. PubMed ID: 21740053
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structural effects of an atomic-level layer of water molecules around proteins solvated in supra-molecular coarse-grained water.
    Riniker S; Eichenberger AP; van Gunsteren WF
    J Phys Chem B; 2012 Aug; 116(30):8873-9. PubMed ID: 22816513
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Coarse-grained models for aqueous polyethylene glycol solutions.
    Choi E; Mondal J; Yethiraj A
    J Phys Chem B; 2014 Jan; 118(1):323-9. PubMed ID: 24350686
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multiscale investigation of chemical interference in proteins.
    Samiotakis A; Homouz D; Cheung MS
    J Chem Phys; 2010 May; 132(17):175101. PubMed ID: 20459186
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Modeling diffusive dynamics in adaptive resolution simulation of liquid water.
    Matysiak S; Clementi C; Praprotnik M; Kremer K; Delle Site L
    J Chem Phys; 2008 Jan; 128(2):024503. PubMed ID: 18205455
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.