These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

261 related articles for article (PubMed ID: 24519881)

  • 1. Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.
    Weitzner BD; Kuroda D; Marze N; Xu J; Gray JJ
    Proteins; 2014 Aug; 82(8):1611-23. PubMed ID: 24519881
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RosettaAntibody: antibody variable region homology modeling server.
    Sircar A; Kim ET; Gray JJ
    Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W474-9. PubMed ID: 19458157
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Predicting antibody complementarity determining region structures without classification.
    Choi Y; Deane CM
    Mol Biosyst; 2011 Dec; 7(12):3327-34. PubMed ID: 22011953
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structural diversity in a human antibody germline library.
    Teplyakov A; Obmolova G; Malia TJ; Luo J; Muzammil S; Sweet R; Almagro JC; Gilliland GL
    MAbs; 2016; 8(6):1045-63. PubMed ID: 27210805
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Accurate Structure Prediction of CDR H3 Loops Enabled by a Novel Structure-Based C-Terminal Constraint.
    Weitzner BD; Gray JJ
    J Immunol; 2017 Jan; 198(1):505-515. PubMed ID: 27872211
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Antibody structure determination using a combination of homology modeling, energy-based refinement, and loop prediction.
    Zhu K; Day T; Warshaviak D; Murrett C; Friesner R; Pearlman D
    Proteins; 2014 Aug; 82(8):1646-55. PubMed ID: 24619874
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Antibody modeling assessment II. Structures and models.
    Teplyakov A; Luo J; Obmolova G; Malia TJ; Sweet R; Stanfield RL; Kodangattil S; Almagro JC; Gilliland GL
    Proteins; 2014 Aug; 82(8):1563-82. PubMed ID: 24633955
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Geometric potentials from deep learning improve prediction of CDR H3 loop structures.
    Ruffolo JA; Guerra C; Mahajan SP; Sulam J; Gray JJ
    Bioinformatics; 2020 Jul; 36(Suppl_1):i268-i275. PubMed ID: 32657412
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Germline-Dependent Antibody Paratope States and Pairing Specific V
    Fernández-Quintero ML; Kroell KB; Bacher LM; Loeffler JR; Quoika PK; Georges G; Bujotzek A; Kettenberger H; Liedl KR
    Front Immunol; 2021; 12():675655. PubMed ID: 34447370
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Systematic classification of CDR-L3 in antibodies: implications of the light chain subtypes and the VL-VH interface.
    Kuroda D; Shirai H; Kobori M; Nakamura H
    Proteins; 2009 Apr; 75(1):139-46. PubMed ID: 18798566
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mutation of Framework Residue H71 Results in Different Antibody Paratope States in Solution.
    Fernández-Quintero ML; Kroell KB; Hofer F; Riccabona JR; Liedl KR
    Front Immunol; 2021; 12():630034. PubMed ID: 33737932
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Antibodies as a model system for comparative model refinement.
    Sellers BD; Nilmeier JP; Jacobson MP
    Proteins; 2010 Aug; 78(11):2490-505. PubMed ID: 20602354
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Modeling and docking of antibody structures with Rosetta.
    Weitzner BD; Jeliazkov JR; Lyskov S; Marze N; Kuroda D; Frick R; Adolf-Bryfogle J; Biswas N; Dunbrack RL; Gray JJ
    Nat Protoc; 2017 Feb; 12(2):401-416. PubMed ID: 28125104
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CDR loop interactions can determine heavy and light chain pairing preferences in bispecific antibodies.
    Fernández-Quintero ML; Kroell KB; Grunewald LJ; Fischer AM; Riccabona JR; Liedl KR
    MAbs; 2022; 14(1):2024118. PubMed ID: 35090383
    [TBL] [Abstract][Full Text] [Related]  

  • 15. De Novo Synthesis and Structural Elucidation of CDR-H3 Loop Mimics.
    Zhao G; Richaud AD; Williamson RT; Feig M; Roche SP
    ACS Chem Biol; 2024 Jul; 19(7):1583-1592. PubMed ID: 38916527
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A new clustering of antibody CDR loop conformations.
    North B; Lehmann A; Dunbrack RL
    J Mol Biol; 2011 Feb; 406(2):228-56. PubMed ID: 21035459
    [TBL] [Abstract][Full Text] [Related]  

  • 17. abYpap: improvements to the prediction of antibody VH/VL packing using gradient boosted regression.
    Boron VA; Martin ACR
    Protein Eng Des Sel; 2023 Jan; 36():. PubMed ID: 38015984
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improved prediction of antibody VL-VH orientation.
    Marze NA; Lyskov S; Gray JJ
    Protein Eng Des Sel; 2016 Oct; 29(10):409-418. PubMed ID: 27276984
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen docking.
    Sivasubramanian A; Sircar A; Chaudhury S; Gray JJ
    Proteins; 2009 Feb; 74(2):497-514. PubMed ID: 19062174
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improving Loop Modeling of the Antibody Complementarity-Determining Region 3 Using Knowledge-Based Restraints.
    Finn JA; Koehler Leman J; Willis JR; Cisneros A; Crowe JE; Meiler J
    PLoS One; 2016; 11(5):e0154811. PubMed ID: 27182833
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.