These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
161 related articles for article (PubMed ID: 24524156)
1. Genome-guided transcriptome assembly in the age of next-generation sequencing. Florea LD; Salzberg SL IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(5):1234-40. PubMed ID: 24524156 [TBL] [Abstract][Full Text] [Related]
2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S; Zhang Y; Zhou Z; Waldbieser G; Sun F; Lu J; Zhang J; Jiang Y; Zhang H; Wang X; Rajendran KV; Khoo L; Kucuktas H; Peatman E; Liu Z BMC Genomics; 2012 Nov; 13():595. PubMed ID: 23127152 [TBL] [Abstract][Full Text] [Related]
4. Transcriptome analysis using next-generation sequencing. Mutz KO; Heilkenbrinker A; Lönne M; Walter JG; Stahl F Curr Opin Biotechnol; 2013 Feb; 24(1):22-30. PubMed ID: 23020966 [TBL] [Abstract][Full Text] [Related]
5. Next-generation transcriptome assembly. Martin JA; Wang Z Nat Rev Genet; 2011 Sep; 12(10):671-82. PubMed ID: 21897427 [TBL] [Abstract][Full Text] [Related]
6. Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome. Fraser BA; Weadick CJ; Janowitz I; Rodd FH; Hughes KA BMC Genomics; 2011 Apr; 12():202. PubMed ID: 21507250 [TBL] [Abstract][Full Text] [Related]
7. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Grabherr MG; Haas BJ; Yassour M; Levin JZ; Thompson DA; Amit I; Adiconis X; Fan L; Raychowdhury R; Zeng Q; Chen Z; Mauceli E; Hacohen N; Gnirke A; Rhind N; di Palma F; Birren BW; Nusbaum C; Lindblad-Toh K; Friedman N; Regev A Nat Biotechnol; 2011 May; 29(7):644-52. PubMed ID: 21572440 [TBL] [Abstract][Full Text] [Related]
8. CLASS: constrained transcript assembly of RNA-seq reads. Song L; Florea L BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S14. PubMed ID: 23734605 [TBL] [Abstract][Full Text] [Related]
9. Efficient and comprehensive representation of uniqueness for next-generation sequencing by minimum unique length analyses. Storvall H; Ramsköld D; Sandberg R PLoS One; 2013; 8(1):e53822. PubMed ID: 23349747 [TBL] [Abstract][Full Text] [Related]
10. Whole transcriptome analysis with sequencing: methods, challenges and potential solutions. Jiang Z; Zhou X; Li R; Michal JJ; Zhang S; Dodson MV; Zhang Z; Harland RM Cell Mol Life Sci; 2015 Sep; 72(18):3425-39. PubMed ID: 26018601 [TBL] [Abstract][Full Text] [Related]
11. Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome. Ptitsyn A; Temanni R; Bouchard C; Anderson PA PLoS One; 2015; 10(9):e0138006. PubMed ID: 26393794 [TBL] [Abstract][Full Text] [Related]
12. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research. Seok J; Xu W; Jiang H; Davis RW; Xiao W PLoS One; 2012; 7(2):e31440. PubMed ID: 22312447 [TBL] [Abstract][Full Text] [Related]
13. [Algorithm for Physiological Interpretation of Transcriptome Profiling Data for Non-Model Organisms]. Gubaev RF; Gorshkov VY; Gapa LM; Gogoleva NE; Vetchinkina EP; Gogolev YV Mol Biol (Mosk); 2018; 52(4):576-590. PubMed ID: 30113023 [TBL] [Abstract][Full Text] [Related]
14. A Ramberg S; Høyheim B; Østbye TK; Andreassen R Front Genet; 2021; 12():656334. PubMed ID: 33986770 [TBL] [Abstract][Full Text] [Related]
15. The full-length transcriptome of Roach NP; Sadowski N; Alessi AF; Timp W; Taylor J; Kim JK Genome Res; 2020 Feb; 30(2):299-312. PubMed ID: 32024661 [TBL] [Abstract][Full Text] [Related]
16. De novo assembly and characterization of Oryza officinalis leaf transcriptome by using RNA-seq. Bao Y; Xu S; Jing X; Meng L; Qin Z Biomed Res Int; 2015; 2015():982065. PubMed ID: 25713814 [TBL] [Abstract][Full Text] [Related]
17. Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing. Mane SP; Evans C; Cooper KL; Crasta OR; Folkerts O; Hutchison SK; Harkins TT; Thierry-Mieg D; Thierry-Mieg J; Jensen RV BMC Genomics; 2009 Jun; 10():264. PubMed ID: 19523228 [TBL] [Abstract][Full Text] [Related]
18. Challenges and advances for transcriptome assembly in non-model species. Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057 [TBL] [Abstract][Full Text] [Related]
19. Comparative performance of transcriptome assembly methods for non-model organisms. Huang X; Chen XG; Armbruster PA BMC Genomics; 2016 Jul; 17():523. PubMed ID: 27464550 [TBL] [Abstract][Full Text] [Related]
20. IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly. Li W; Feng J; Jiang T J Comput Biol; 2011 Nov; 18(11):1693-707. PubMed ID: 21951053 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]