310 related articles for article (PubMed ID: 24526710)
1. BIMA V3: an aligner customized for mate pair library sequencing.
Drucker TM; Johnson SH; Murphy SJ; Cradic KW; Therneau TM; Vasmatzis G
Bioinformatics; 2014 Jun; 30(11):1627-9. PubMed ID: 24526710
[TBL] [Abstract][Full Text] [Related]
2. Meta-aligner: long-read alignment based on genome statistics.
Nashta-Ali D; Aliyari A; Ahmadian Moghadam A; Edrisi MA; Motahari SA; Hossein Khalaj B
BMC Bioinformatics; 2017 Feb; 18(1):126. PubMed ID: 28231760
[TBL] [Abstract][Full Text] [Related]
3. Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics.
Thankaswamy-Kosalai S; Sen P; Nookaew I
Genomics; 2017 Jul; 109(3-4):186-191. PubMed ID: 28286147
[TBL] [Abstract][Full Text] [Related]
4. BatAlign: an incremental method for accurate alignment of sequencing reads.
Lim JQ; Tennakoon C; Guan P; Sung WK
Nucleic Acids Res; 2015 Sep; 43(16):e107. PubMed ID: 26170239
[TBL] [Abstract][Full Text] [Related]
5. Ψ-RA: a parallel sparse index for genomic read alignment.
Oğuzhan Külekci M; Hon WK; Shah R; Scott Vitter J; Xu B
BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S7. PubMed ID: 21989248
[TBL] [Abstract][Full Text] [Related]
6. HISEA: HIerarchical SEed Aligner for PacBio data.
Khiste N; Ilie L
BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
[TBL] [Abstract][Full Text] [Related]
7. Alignment of Next-Generation Sequencing Reads.
Reinert K; Langmead B; Weese D; Evers DJ
Annu Rev Genomics Hum Genet; 2015; 16():133-51. PubMed ID: 25939052
[TBL] [Abstract][Full Text] [Related]
8. Assembling short reads from jumping libraries with large insert sizes.
Vasilinetc I; Prjibelski AD; Gurevich A; Korobeynikov A; Pevzner PA
Bioinformatics; 2015 Oct; 31(20):3262-8. PubMed ID: 26040456
[TBL] [Abstract][Full Text] [Related]
9. A fast read alignment method based on seed-and-vote for next generation sequencing.
Liu S; Wang Y; Wang F
BMC Bioinformatics; 2016 Dec; 17(Suppl 17):466. PubMed ID: 28155631
[TBL] [Abstract][Full Text] [Related]
10. SoftSearch: integration of multiple sequence features to identify breakpoints of structural variations.
Hart SN; Sarangi V; Moore R; Baheti S; Bhavsar JD; Couch FJ; Kocher JP
PLoS One; 2013; 8(12):e83356. PubMed ID: 24358278
[TBL] [Abstract][Full Text] [Related]
11. Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries.
Gillet-Markowska A; Richard H; Fischer G; Lafontaine I
Bioinformatics; 2015 Mar; 31(6):801-8. PubMed ID: 25380961
[TBL] [Abstract][Full Text] [Related]
12. Faster single-end alignment generation utilizing multi-thread for BWA.
Jo H; Koh G
Biomed Mater Eng; 2015; 26 Suppl 1():S1791-6. PubMed ID: 26405948
[TBL] [Abstract][Full Text] [Related]
13. SVAtools for junction detection of genome-wide chromosomal rearrangements by mate-pair sequencing (MPseq).
Johnson SH; Smadbeck JB; Smoley SA; Gaitatzes A; Murphy SJ; Harris FR; Drucker TM; Zenka RM; Pitel BA; Rowsey RA; Hoppman NL; Aypar U; Sukov WR; Jenkins RB; Feldman AL; Kearney HM; Vasmatzis G
Cancer Genet; 2018 Feb; 221():1-18. PubMed ID: 29405991
[TBL] [Abstract][Full Text] [Related]
14. TruSPAdes: barcode assembly of TruSeq synthetic long reads.
Bankevich A; Pevzner PA
Nat Methods; 2016 Mar; 13(3):248-50. PubMed ID: 26828418
[TBL] [Abstract][Full Text] [Related]
15. Optimization and cost-saving in tagmentation-based mate-pair library preparation and sequencing.
Tatsumi K; Nishimura O; Itomi K; Tanegashima C; Kuraku S
Biotechniques; 2015 May; 58(5):253-7. PubMed ID: 25967904
[TBL] [Abstract][Full Text] [Related]
16. Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms.
Bartenhagen C; Dugas M
Brief Bioinform; 2016 Jan; 17(1):51-62. PubMed ID: 25998133
[TBL] [Abstract][Full Text] [Related]
17. Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias.
Sahlin K; Frånberg M; Arvestad L
J Comput Biol; 2017 Jun; 24(6):581-589. PubMed ID: 27681236
[TBL] [Abstract][Full Text] [Related]
18. A Long Fragment Aligner called ALFALFA.
Vyverman M; Baets BD; Fack V; Dawyndt P
BMC Bioinformatics; 2015 May; 16(1):159. PubMed ID: 25971785
[TBL] [Abstract][Full Text] [Related]
19. NxTrim: optimized trimming of Illumina mate pair reads.
O'Connell J; Schulz-Trieglaff O; Carlson E; Hims MM; Gormley NA; Cox AJ
Bioinformatics; 2015 Jun; 31(12):2035-7. PubMed ID: 25661542
[TBL] [Abstract][Full Text] [Related]
20. YOABS: yet other aligner of biological sequences--an efficient linearly scaling nucleotide aligner.
Galinsky VL
Bioinformatics; 2012 Apr; 28(8):1070-7. PubMed ID: 22402614
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]