130 related articles for article (PubMed ID: 24564201)
1. Rigidity analysis of protein biological assemblies and periodic crystal structures.
Jagodzinski F; Clark P; Grant J; Liu T; Monastra S; Streinu I
BMC Bioinformatics; 2013; 14 Suppl 18(Suppl 18):S2. PubMed ID: 24564201
[TBL] [Abstract][Full Text] [Related]
2. Towards accurate modeling of noncovalent interactions for protein rigidity analysis.
Fox N; Streinu I
BMC Bioinformatics; 2013; 14 Suppl 18(Suppl 18):S3. PubMed ID: 24564209
[TBL] [Abstract][Full Text] [Related]
3. KINARI-Web: a server for protein rigidity analysis.
Fox N; Jagodzinski F; Li Y; Streinu I
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W177-83. PubMed ID: 21693559
[TBL] [Abstract][Full Text] [Related]
4. Automated evaluation of quaternary structures from protein crystals.
Bliven S; Lafita A; Parker A; Capitani G; Duarte JM
PLoS Comput Biol; 2018 Apr; 14(4):e1006104. PubMed ID: 29708963
[TBL] [Abstract][Full Text] [Related]
5. Using rigidity analysis to probe mutation-induced structural changes in proteins.
Jagodzinski F; Hardy J; Streinu I
J Bioinform Comput Biol; 2012 Jun; 10(3):1242010. PubMed ID: 22809386
[TBL] [Abstract][Full Text] [Related]
6. Statistical analysis of interface similarity in crystals of homologous proteins.
Xu Q; Canutescu AA; Wang G; Shapovalov M; Obradovic Z; Dunbrack RL
J Mol Biol; 2008 Aug; 381(2):487-507. PubMed ID: 18599072
[TBL] [Abstract][Full Text] [Related]
7. Matching Multiple Rigid Domain Decompositions of Proteins.
Flynn E; Streinu I
IEEE Trans Nanobioscience; 2017 Mar; 16(2):81-90. PubMed ID: 28141528
[TBL] [Abstract][Full Text] [Related]
8. Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
Inbar Y; Benyamini H; Nussinov R; Wolfson HJ
Phys Biol; 2005 Nov; 2(4):S156-65. PubMed ID: 16280621
[TBL] [Abstract][Full Text] [Related]
9. Large scale rigidity-based flexibility analysis of biomolecules.
Streinu I
Struct Dyn; 2016 Jan; 3(1):012005. PubMed ID: 26958583
[TBL] [Abstract][Full Text] [Related]
10. ACHESYM: an algorithm and server for standardized placement of macromolecular models in the unit cell.
Kowiel M; Jaskolski M; Dauter Z
Acta Crystallogr D Biol Crystallogr; 2014 Dec; 70(Pt 12):3290-8. PubMed ID: 25478846
[TBL] [Abstract][Full Text] [Related]
11. Inferring and Using Protein Quaternary Structure Information from Crystallographic Data.
Dey S; Levy ED
Methods Mol Biol; 2018; 1764():357-375. PubMed ID: 29605927
[TBL] [Abstract][Full Text] [Related]
12. The protein common assembly database (ProtCAD)-a comprehensive structural resource of protein complexes.
Xu Q; Dunbrack RL
Nucleic Acids Res; 2023 Jan; 51(D1):D466-D478. PubMed ID: 36300618
[TBL] [Abstract][Full Text] [Related]
13. Investigation of protein quaternary structure via stoichiometry and symmetry information.
Korkmaz S; Duarte JM; Prlić A; Goksuluk D; Zararsiz G; Saracbasi O; Burley SK; Rose PW
PLoS One; 2018; 13(6):e0197176. PubMed ID: 29864163
[TBL] [Abstract][Full Text] [Related]
14. Macromolecular complexes in crystals and solutions.
Krissinel E
Acta Crystallogr D Biol Crystallogr; 2011 Apr; 67(Pt 4):376-85. PubMed ID: 21460456
[TBL] [Abstract][Full Text] [Related]
15. The limit of accuracy of protein modeling: influence of crystal packing on protein structure.
Eyal E; Gerzon S; Potapov V; Edelman M; Sobolev V
J Mol Biol; 2005 Aug; 351(2):431-42. PubMed ID: 16005885
[TBL] [Abstract][Full Text] [Related]
16. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
Foffi G; Pastore A; Piazza F; Temussi PA
Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
[TBL] [Abstract][Full Text] [Related]
17. Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank.
Joosten RP; Joosten K; Cohen SX; Vriend G; Perrakis A
Bioinformatics; 2011 Dec; 27(24):3392-8. PubMed ID: 22034521
[TBL] [Abstract][Full Text] [Related]
18. BioSuper: a web tool for the superimposition of biomolecules and assemblies with rotational symmetry.
Rueda M; Orozco M; Totrov M; Abagyan R
BMC Struct Biol; 2013 Dec; 13():32. PubMed ID: 24330655
[TBL] [Abstract][Full Text] [Related]
19. PDB-wide identification of physiological hetero-oligomeric assemblies based on conserved quaternary structure geometry.
Dey S; Levy ED
Structure; 2021 Nov; 29(11):1303-1311.e3. PubMed ID: 34520740
[TBL] [Abstract][Full Text] [Related]
20. Inhibition of HIV-1 protease: the rigidity perspective.
Heal JW; Jimenez-Roldan JE; Wells SA; Freedman RB; Römer RA
Bioinformatics; 2012 Feb; 28(3):350-7. PubMed ID: 22291339
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
