These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

144 related articles for article (PubMed ID: 24564205)

  • 1. Lateral gene transfer, rearrangement, reconciliation.
    Patterson M; Szöllősi G; Daubin V; Tannier E
    BMC Bioinformatics; 2013; 14 Suppl 15(Suppl 15):S4. PubMed ID: 24564205
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evolution of gene neighborhoods within reconciled phylogenies.
    Bérard S; Gallien C; Boussau B; Szöllősi GJ; Daubin V; Tannier E
    Bioinformatics; 2012 Sep; 28(18):i382-i388. PubMed ID: 22962456
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies.
    Duchemin W; Anselmetti Y; Patterson M; Ponty Y; Bérard S; Chauve C; Scornavacca C; Daubin V; Tannier E
    Genome Biol Evol; 2017 May; 9(5):1312-1319. PubMed ID: 28402423
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.
    Mirkin BG; Fenner TI; Galperin MY; Koonin EV
    BMC Evol Biol; 2003 Jan; 3():2. PubMed ID: 12515582
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RecPhyloXML: a format for reconciled gene trees.
    Duchemin W; Gence G; Arigon Chifolleau AM; Arvestad L; Bansal MS; Berry V; Boussau B; Chevenet F; Comte N; Davín AA; Dessimoz C; Dylus D; Hasic D; Mallo D; Planel R; Posada D; Scornavacca C; Szöllosi G; Zhang L; Tannier É; Daubin V
    Bioinformatics; 2018 Nov; 34(21):3646-3652. PubMed ID: 29762653
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fast ancestral gene order reconstruction of genomes with unequal gene content.
    Feijão P; Araujo E
    BMC Bioinformatics; 2016 Nov; 17(Suppl 14):413. PubMed ID: 28185578
    [TBL] [Abstract][Full Text] [Related]  

  • 7. On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
    Kundu S; Bansal MS
    BMC Bioinformatics; 2018 Aug; 19(Suppl 9):290. PubMed ID: 30367593
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.
    Jacox E; Weller M; Tannier E; Scornavacca C
    Bioinformatics; 2017 Apr; 33(7):980-987. PubMed ID: 28073758
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach.
    Chauve C; Ponty Y; Zanetti J
    BMC Bioinformatics; 2015; 16 Suppl 19(Suppl 19):S6. PubMed ID: 26696141
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins.
    Makarova KS; Ponomarev VA; Koonin EV
    Genome Biol; 2001; 2(9):RESEARCH 0033. PubMed ID: 11574053
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Improved gene tree error correction in the presence of horizontal gene transfer.
    Bansal MS; Wu YC; Alm EJ; Kellis M
    Bioinformatics; 2015 Apr; 31(8):1211-8. PubMed ID: 25481006
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.
    Bansal MS; Alm EJ; Kellis M
    Bioinformatics; 2012 Jun; 28(12):i283-91. PubMed ID: 22689773
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution.
    Noutahi E; El-Mabrouk N
    BMC Genomics; 2018 May; 19(Suppl 2):102. PubMed ID: 29764363
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
    Kordi M; Bansal MS
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1077-1090. PubMed ID: 28622673
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.
    Stolzer M; Lai H; Xu M; Sathaye D; Vernot B; Durand D
    Bioinformatics; 2012 Sep; 28(18):i409-i415. PubMed ID: 22962460
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences.
    Xu Q; Jin L; Zhang Y; Zhang X; Zheng C; Leebens-Mack JH; Sankoff D
    J Comput Biol; 2021 Nov; 28(11):1156-1179. PubMed ID: 34783601
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gene tree and species tree reconciliation with endosymbiotic gene transfer.
    Anselmetti Y; El-Mabrouk N; Lafond M; Ouangraoua A
    Bioinformatics; 2021 Jul; 37(Suppl_1):i120-i132. PubMed ID: 34252921
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests.
    Abby SS; Tannier E; Gouy M; Daubin V
    BMC Bioinformatics; 2010 Jun; 11():324. PubMed ID: 20550700
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-scale phylogenetic analysis finds extensive gene transfer among fungi.
    Szöllősi GJ; Davín AA; Tannier E; Daubin V; Boussau B
    Philos Trans R Soc Lond B Biol Sci; 2015 Sep; 370(1678):20140335. PubMed ID: 26323765
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DUPCAR: reconstructing contiguous ancestral regions with duplications.
    Ma J; Ratan A; Raney BJ; Suh BB; Zhang L; Miller W; Haussler D
    J Comput Biol; 2008 Oct; 15(8):1007-27. PubMed ID: 18774902
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.