280 related articles for article (PubMed ID: 24564377)
1. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
Wang Y; Leung H; Yiu S; Chin F
BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
[TBL] [Abstract][Full Text] [Related]
2. Exploiting topic modeling to boost metagenomic reads binning.
Zhang R; Cheng Z; Guan J; Zhou S
BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
[TBL] [Abstract][Full Text] [Related]
3. Metagenome Assembly and Contig Assignment.
Zhang Q
Methods Mol Biol; 2018; 1849():179-192. PubMed ID: 30298255
[TBL] [Abstract][Full Text] [Related]
4. METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs.
Zhang Z; Zhang L
BMC Bioinformatics; 2021 Jul; 22(Suppl 10):378. PubMed ID: 34294039
[TBL] [Abstract][Full Text] [Related]
5. Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.
Mallawaarachchi V; Lin Y
J Comput Biol; 2022 Dec; 29(12):1357-1376. PubMed ID: 36367700
[TBL] [Abstract][Full Text] [Related]
6. GraphBin: refined binning of metagenomic contigs using assembly graphs.
Mallawaarachchi V; Wickramarachchi A; Lin Y
Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528
[TBL] [Abstract][Full Text] [Related]
7. MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs.
Huson DH; Albrecht B; Bağcı C; Bessarab I; Górska A; Jolic D; Williams RBH
Biol Direct; 2018 Apr; 13(1):6. PubMed ID: 29678199
[TBL] [Abstract][Full Text] [Related]
8. Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes.
Hauptfeld E; Pappas N; van Iwaarden S; Snoek BL; Aldas-Vargas A; Dutilh BE; von Meijenfeldt FAB
Nat Commun; 2024 Apr; 15(1):3373. PubMed ID: 38643272
[TBL] [Abstract][Full Text] [Related]
9. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
Rotimi AM; Pierneef R; Reva ON
BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
[TBL] [Abstract][Full Text] [Related]
10. A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting.
Liao R; Zhang R; Guan J; Zhou S
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):42-54. PubMed ID: 26355506
[TBL] [Abstract][Full Text] [Related]
11. Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data.
Frank JA; Pan Y; Tooming-Klunderud A; Eijsink VGH; McHardy AC; Nederbragt AJ; Pope PB
Sci Rep; 2016 May; 6():25373. PubMed ID: 27156482
[TBL] [Abstract][Full Text] [Related]
12. Improving contig binning of metagenomic data using [Formula: see text] oligonucleotide frequency dissimilarity.
Wang Y; Wang K; Lu YY; Sun F
BMC Bioinformatics; 2017 Sep; 18(1):425. PubMed ID: 28931373
[TBL] [Abstract][Full Text] [Related]
13. A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio.
Leung HC; Yiu SM; Yang B; Peng Y; Wang Y; Liu Z; Chen J; Qin J; Li R; Chin FY
Bioinformatics; 2011 Jun; 27(11):1489-95. PubMed ID: 21493653
[TBL] [Abstract][Full Text] [Related]
14. Improving metagenomic binning results with overlapped bins using assembly graphs.
Mallawaarachchi VG; Wickramarachchi AS; Lin Y
Algorithms Mol Biol; 2021 May; 16(1):3. PubMed ID: 33947431
[TBL] [Abstract][Full Text] [Related]
15. Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC.
Parrello B; Butler R; Chlenski P; Pusch GD; Overbeek R
PLoS One; 2021; 16(4):e0250092. PubMed ID: 33857229
[TBL] [Abstract][Full Text] [Related]
16. MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample.
Wang Y; Leung HC; Yiu SM; Chin FY
Bioinformatics; 2012 Sep; 28(18):i356-i362. PubMed ID: 22962452
[TBL] [Abstract][Full Text] [Related]
17. RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles.
Nalbantoglu OU; Way SF; Hinrichs SH; Sayood K
BMC Bioinformatics; 2011 Jan; 12():41. PubMed ID: 21281493
[TBL] [Abstract][Full Text] [Related]
18. Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics.
Wu E; Mallawaarachchi V; Zhao J; Yang Y; Liu H; Wang X; Shen C; Lin Y; Qiao L
Microbiome; 2024 Mar; 12(1):58. PubMed ID: 38504332
[TBL] [Abstract][Full Text] [Related]
19. MetaCluster 4.0: a novel binning algorithm for NGS reads and huge number of species.
Wang Y; Leung HC; Yiu SM; Chin FY
J Comput Biol; 2012 Feb; 19(2):241-9. PubMed ID: 22300323
[TBL] [Abstract][Full Text] [Related]
20. Genome-resolved metagenomics using environmental and clinical samples.
Kayani MUR; Huang W; Feng R; Chen L
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33758906
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]