BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 24564718)

  • 1. Spectral probabilities of top-down tandem mass spectra.
    Liu X; Segar MW; Li SC; Kim S
    BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S9. PubMed ID: 24564718
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A Markov Chain Monte Carlo Method for Estimating the Statistical Significance of Proteoform Identifications by Top-Down Mass Spectrometry.
    Kou Q; Wang Z; Lubeckyj RA; Wu S; Sun L; Liu X
    J Proteome Res; 2019 Mar; 18(3):878-889. PubMed ID: 30638379
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The generating function approach for Peptide identification in spectral networks.
    Guthals A; Boucher C; Bandeira N
    J Comput Biol; 2015 May; 22(5):353-66. PubMed ID: 25423621
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A graph-based filtering method for top-down mass spectral identification.
    Yang R; Zhu D
    BMC Genomics; 2018 Sep; 19(Suppl 7):666. PubMed ID: 30255788
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications.
    Lu B; Chen T
    Bioinformatics; 2003 Oct; 19 Suppl 2():ii113-21. PubMed ID: 14534180
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus.
    Shortreed MR; Millikin RJ; Liu L; Rolfs Z; Miller RM; Schaffer LV; Frey BL; Smith LM
    J Proteome Res; 2021 Apr; 20(4):1997-2004. PubMed ID: 33683901
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The spectral networks paradigm in high throughput mass spectrometry.
    Guthals A; Watrous JD; Dorrestein PC; Bandeira N
    Mol Biosyst; 2012 Oct; 8(10):2535-44. PubMed ID: 22610447
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein Identification from Tandem Mass Spectra by Database Searching.
    Edwards NJ
    Methods Mol Biol; 2017; 1558():357-380. PubMed ID: 28150247
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics.
    McCool EN; Lodge JM; Basharat AR; Liu X; Coon JJ; Sun L
    J Am Soc Mass Spectrom; 2019 Dec; 30(12):2470-2479. PubMed ID: 31073891
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MUMAL: multivariate analysis in shotgun proteomics using machine learning techniques.
    Cerqueira FR; Ferreira RS; Oliveira AP; Gomes AP; Ramos HJ; Graber A; Baumgartner C
    BMC Genomics; 2012; 13 Suppl 5(Suppl 5):S4. PubMed ID: 23095859
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identification of Unexpected Protein Modifications by Mass Spectrometry-Based Proteomics.
    Ahmadi S; Winter D
    Methods Mol Biol; 2019; 1871():225-251. PubMed ID: 30276743
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry.
    Ning K; Ng HK; Leong HW
    Genome Inform; 2007; 19():119-30. PubMed ID: 18546510
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Refining similarity scoring to enable decoy-free validation in spectral library searching.
    Shao W; Zhu K; Lam H
    Proteomics; 2013 Nov; 13(22):3273-83. PubMed ID: 24115759
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.
    Schaffer LV; Millikin RJ; Shortreed MR; Scalf M; Smith LM
    J Proteome Res; 2020 Aug; 19(8):3510-3517. PubMed ID: 32584579
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A graph-based approach for proteoform identification and quantification using top-down homogeneous multiplexed tandem mass spectra.
    Zhu K; Liu X
    BMC Bioinformatics; 2018 Aug; 19(Suppl 9):280. PubMed ID: 30367573
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases.
    Kim S; Gupta N; Pevzner PA
    J Proteome Res; 2008 Aug; 7(8):3354-63. PubMed ID: 18597511
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences.
    Fu Y; Jia W; Lu Z; Wang H; Yuan Z; Chi H; Li Y; Xiu L; Wang W; Liu C; Wang L; Sun R; Gao W; Qian X; He SM
    BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S50. PubMed ID: 19208153
    [TBL] [Abstract][Full Text] [Related]  

  • 18. False discovery rate estimation using candidate peptides for each spectrum.
    Lee S; Park H; Kim H
    BMC Bioinformatics; 2022 Nov; 23(1):454. PubMed ID: 36319948
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MixGF: spectral probabilities for mixture spectra from more than one peptide.
    Wang J; Bourne PE; Bandeira N
    Mol Cell Proteomics; 2014 Dec; 13(12):3688-97. PubMed ID: 25225354
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.
    Nesvizhskii AI
    J Proteomics; 2010 Oct; 73(11):2092-123. PubMed ID: 20816881
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.