These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

331 related articles for article (PubMed ID: 24564983)

  • 1. Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce.
    Zhang B; Yehdego DT; Johnson KL; Leung MY; Taufer M
    BMC Struct Biol; 2013; 13 Suppl 1(Suppl 1):S3. PubMed ID: 24564983
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce.
    Yehdego DT; Zhang B; Kodimala VK; Johnson KL; Taufer M; Leung MY
    IEEE Int Symp Parallel Distrib Process Workshops Phd Forum; 2013 May; 2013():520-529. PubMed ID: 26023357
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures.
    Bleckley S; Stone JW; Schroeder SJ
    PLoS One; 2012; 7(12):e52414. PubMed ID: 23300665
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
    Harmanci AO; Sharma G; Mathews DH
    BMC Bioinformatics; 2011 Apr; 12():108. PubMed ID: 21507242
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.
    Jabbari H; Condon A
    BMC Bioinformatics; 2014 May; 15():147. PubMed ID: 24884954
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A domain-based model for predicting large and complex pseudoknotted structures.
    Cao S; Chen SJ
    RNA Biol; 2012 Feb; 9(2):200-11. PubMed ID: 22418848
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Novel and efficient RNA secondary structure prediction using hierarchical folding.
    Jabbari H; Condon A; Zhao S
    J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improved free energy parameters for RNA pseudoknotted secondary structure prediction.
    Andronescu MS; Pop C; Condon AE
    RNA; 2010 Jan; 16(1):26-42. PubMed ID: 19933322
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SARNA-Predict: accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing.
    Tsang HH; Wiese KC
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(4):727-40. PubMed ID: 21030739
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Parsing nucleic acid pseudoknotted secondary structure: algorithm and applications.
    Rastegari B; Condon A
    J Comput Biol; 2007; 14(1):16-32. PubMed ID: 17381343
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Simultaneous prediction of RNA secondary structure and helix coaxial stacking.
    Shareghi P; Wang Y; Malmberg R; Cai L
    BMC Genomics; 2012 Jun; 13 Suppl 3(Suppl 3):S7. PubMed ID: 22759616
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Modeling RNA secondary structure folding ensembles using SHAPE mapping data.
    Spasic A; Assmann SM; Bevilacqua PC; Mathews DH
    Nucleic Acids Res; 2018 Jan; 46(1):314-323. PubMed ID: 29177466
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Swellix: a computational tool to explore RNA conformational space.
    Sloat N; Liu JW; Schroeder SJ
    BMC Bioinformatics; 2017 Nov; 18(1):504. PubMed ID: 29157200
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Thermodynamic heuristics with case-based reasoning: combined insights for RNA pseudoknot secondary structure.
    Al-Khatib RM; Rashid NA; Abdullah R
    J Biomol Struct Dyn; 2011 Aug; 29(1):1-26. PubMed ID: 21696223
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Analysis of energy-based algorithms for RNA secondary structure prediction.
    Hajiaghayi M; Condon A; Hoos HH
    BMC Bioinformatics; 2012 Feb; 13():22. PubMed ID: 22296803
    [TBL] [Abstract][Full Text] [Related]  

  • 16. IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming.
    Sato K; Kato Y; Hamada M; Akutsu T; Asai K
    Bioinformatics; 2011 Jul; 27(13):i85-93. PubMed ID: 21685106
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RnaPredict--an evolutionary algorithm for RNA secondary structure prediction.
    Wiese K; Deschenes A; Hendriks A
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(1):25-41. PubMed ID: 18245873
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot.
    Trinity L; Stege U; Jabbari H
    PLoS Comput Biol; 2024 May; 20(5):e1011787. PubMed ID: 38713726
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Predictions of RNA secondary structure by combining homologous sequence information.
    Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
    Bioinformatics; 2009 Jun; 25(12):i330-8. PubMed ID: 19478007
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
    Ren J; Rastegari B; Condon A; Hoos HH
    RNA; 2005 Oct; 11(10):1494-504. PubMed ID: 16199760
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.