175 related articles for article (PubMed ID: 24580380)
21. A DNA polymerase beta mutator mutant with reduced nucleotide discrimination and increased protein stability.
Shah AM; Conn DA; Li SX; Capaldi A; Jäger J; Sweasy JB
Biochemistry; 2001 Sep; 40(38):11372-81. PubMed ID: 11560485
[TBL] [Abstract][Full Text] [Related]
22. Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4.
Wong JH; Fiala KA; Suo Z; Ling H
J Mol Biol; 2008 May; 379(2):317-30. PubMed ID: 18448122
[TBL] [Abstract][Full Text] [Related]
23. DNA polymerase beta: pre-steady-state kinetic analysis and roles of arginine-283 in catalysis and fidelity.
Werneburg BG; Ahn J; Zhong X; Hondal RJ; Kraynov VS; Tsai MD
Biochemistry; 1996 Jun; 35(22):7041-50. PubMed ID: 8679529
[TBL] [Abstract][Full Text] [Related]
24. An abridged transition state model to derive structure, dynamics, and energy components of DNA polymerase β fidelity.
Klvaňa M; Jeřábek P; Goodman MF; Florián J
Biochemistry; 2011 Aug; 50(32):7023-32. PubMed ID: 21739967
[TBL] [Abstract][Full Text] [Related]
25. Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes.
Arndt JW; Gong W; Zhong X; Showalter AK; Liu J; Dunlap CA; Lin Z; Paxson C; Tsai MD; Chan MK
Biochemistry; 2001 May; 40(18):5368-75. PubMed ID: 11330999
[TBL] [Abstract][Full Text] [Related]
26. Loss of DNA polymerase beta stacking interactions with templating purines, but not pyrimidines, alters catalytic efficiency and fidelity.
Beard WA; Shock DD; Yang XP; DeLauder SF; Wilson SH
J Biol Chem; 2002 Mar; 277(10):8235-42. PubMed ID: 11756435
[TBL] [Abstract][Full Text] [Related]
27. Insights into the effect of minor groove interactions and metal cofactors on mutagenic replication by human DNA polymerase β.
Koag MC; Lee S
Biochem J; 2018 Feb; 475(3):571-585. PubMed ID: 29301983
[TBL] [Abstract][Full Text] [Related]
28. Influence of DNA structure on DNA polymerase beta active site function: extension of mutagenic DNA intermediates.
Beard WA; Shock DD; Wilson SH
J Biol Chem; 2004 Jul; 279(30):31921-9. PubMed ID: 15145936
[TBL] [Abstract][Full Text] [Related]
29. Identification of critical residues for the tight binding of both correct and incorrect nucleotides to human DNA polymerase λ.
Brown JA; Pack LR; Sherrer SM; Kshetry AK; Newmister SA; Fowler JD; Taylor JS; Suo Z
J Mol Biol; 2010 Nov; 403(4):505-15. PubMed ID: 20851705
[TBL] [Abstract][Full Text] [Related]
30. Substrate-induced DNA strand misalignment during catalytic cycling by DNA polymerase lambda.
Bebenek K; Garcia-Diaz M; Foley MC; Pedersen LC; Schlick T; Kunkel TA
EMBO Rep; 2008 May; 9(5):459-64. PubMed ID: 18369368
[TBL] [Abstract][Full Text] [Related]
31. A Change in the Rate-Determining Step of Polymerization by the K289M DNA Polymerase β Cancer-Associated Variant.
Alnajjar KS; Garcia-Barboza B; Negahbani A; Nakhjiri M; Kashemirov B; McKenna C; Goodman MF; Sweasy JB
Biochemistry; 2017 Apr; 56(15):2096-2105. PubMed ID: 28326765
[TBL] [Abstract][Full Text] [Related]
32. Structural insights into DNA polymerase beta deterrents for misincorporation support an induced-fit mechanism for fidelity.
Krahn JM; Beard WA; Wilson SH
Structure; 2004 Oct; 12(10):1823-32. PubMed ID: 15458631
[TBL] [Abstract][Full Text] [Related]
33. Sulfolobus solfataricus DNA polymerase Dpo4 is partially inhibited by "wobble" pairing between O6-methylguanine and cytosine, but accurate bypass is preferred.
Eoff RL; Irimia A; Egli M; Guengerich FP
J Biol Chem; 2007 Jan; 282(2):1456-67. PubMed ID: 17105728
[TBL] [Abstract][Full Text] [Related]
34. Contribution of the reverse rate of the conformational step to polymerase beta fidelity.
Bakhtina M; Roettger MP; Tsai MD
Biochemistry; 2009 Apr; 48(14):3197-208. PubMed ID: 19231836
[TBL] [Abstract][Full Text] [Related]
35. Use of viscogens, dNTPalphaS, and rhodium(III) as probes in stopped-flow experiments to obtain new evidence for the mechanism of catalysis by DNA polymerase beta.
Bakhtina M; Lee S; Wang Y; Dunlap C; Lamarche B; Tsai MD
Biochemistry; 2005 Apr; 44(13):5177-87. PubMed ID: 15794655
[TBL] [Abstract][Full Text] [Related]
36. Role of the 2-amino group of purines during dNTP polymerization by human DNA polymerase alpha.
Patro JN; Urban M; Kuchta RD
Biochemistry; 2009 Jan; 48(1):180-9. PubMed ID: 19072331
[TBL] [Abstract][Full Text] [Related]
37. Characterization of the active site of DNA polymerase beta by molecular dynamics and quantum chemical calculation.
Rittenhouse RC; Apostoluk WK; Miller JH; Straatsma TP
Proteins; 2003 Nov; 53(3):667-82. PubMed ID: 14579358
[TBL] [Abstract][Full Text] [Related]
38. Nucleotide selection by the Y-family DNA polymerase Dpo4 involves template translocation and misalignment.
Brenlla A; Markiewicz RP; Rueda D; Romano LJ
Nucleic Acids Res; 2014 Feb; 42(4):2555-63. PubMed ID: 24270793
[TBL] [Abstract][Full Text] [Related]
39. Energy analysis of chemistry for correct insertion by DNA polymerase beta.
Lin P; Pedersen LC; Batra VK; Beard WA; Wilson SH; Pedersen LG
Proc Natl Acad Sci U S A; 2006 Sep; 103(36):13294-9. PubMed ID: 16938895
[TBL] [Abstract][Full Text] [Related]
40. Promutagenic bypass of 7,8-dihydro-8-oxoadenine by translesion synthesis DNA polymerase Dpo4.
Jung H; Lee S
Biochem J; 2020 Aug; 477(15):2859-2871. PubMed ID: 32686822
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
