These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 24587135)

  • 1. Improvement in low-homology template-based modeling by employing a model evaluation method with focus on topology.
    Dai W; Song T; Wang X; Jin X; Deng L; Wu A; Jiang T
    PLoS One; 2014; 9(2):e89935. PubMed ID: 24587135
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.
    Yang J; Zhang W; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y
    Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):233-46. PubMed ID: 26343917
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation.
    Cao Y; Song L; Miao Z; Hu Y; Tian L; Jiang T
    Bioinformatics; 2011 Mar; 27(6):785-90. PubMed ID: 21216772
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
    Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
    PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14).
    Kinch LN; Schaeffer RD; Kryshtafovych A; Grishin NV
    Proteins; 2021 Dec; 89(12):1618-1632. PubMed ID: 34350630
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Does inclusion of residue-residue contact information boost protein threading?
    Bhattacharya S; Bhattacharya D
    Proteins; 2019 Jul; 87(7):596-606. PubMed ID: 30882932
    [TBL] [Abstract][Full Text] [Related]  

  • 7. LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.
    Zheng W; Zhang C; Wuyun Q; Pearce R; Li Y; Zhang Y
    Nucleic Acids Res; 2019 Jul; 47(W1):W429-W436. PubMed ID: 31081035
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Assessment of template-based modeling of protein structure in CASP11.
    Modi V; Xu Q; Adhikari S; Dunbrack RL
    Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):200-20. PubMed ID: 27081927
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RAPTOR: optimal protein threading by linear programming.
    Xu J; Li M; Kim D; Xu Y
    J Bioinform Comput Biol; 2003 Apr; 1(1):95-117. PubMed ID: 15290783
    [TBL] [Abstract][Full Text] [Related]  

  • 10. I-TASSER: fully automated protein structure prediction in CASP8.
    Zhang Y
    Proteins; 2009; 77 Suppl 9(Suppl 9):100-13. PubMed ID: 19768687
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Template based protein structure modeling by global optimization in CASP11.
    Joo K; Joung I; Lee SY; Kim JY; Cheng Q; Manavalan B; Joung JY; Heo S; Lee J; Nam M; Lee IH; Lee SJ; Lee J
    Proteins; 2016 Sep; 84 Suppl 1():221-32. PubMed ID: 26329522
    [TBL] [Abstract][Full Text] [Related]  

  • 12. TOUCHSTONE: a unified approach to protein structure prediction.
    Skolnick J; Zhang Y; Arakaki AK; Kolinski A; Boniecki M; Szilágyi A; Kihara D
    Proteins; 2003; 53 Suppl 6():469-79. PubMed ID: 14579335
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluating the significance of contact maps in low-homology protein modeling using contact-assisted threading.
    Bhattacharya S; Bhattacharya D
    Sci Rep; 2020 Feb; 10(1):2908. PubMed ID: 32076047
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Low-homology protein threading.
    Peng J; Xu J
    Bioinformatics; 2010 Jun; 26(12):i294-300. PubMed ID: 20529920
    [TBL] [Abstract][Full Text] [Related]  

  • 15. FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
    Wang C; Zhang H; Zheng WM; Xu D; Zhu J; Wang B; Ning K; Sun S; Li SC; Bu D
    Bioinformatics; 2016 Feb; 32(3):462-4. PubMed ID: 26454278
    [TBL] [Abstract][Full Text] [Related]  

  • 16. eThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures.
    Brylinski M; Lingam D
    PLoS One; 2012; 7(11):e50200. PubMed ID: 23185577
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions.
    Ko J; Park H; Seok C
    BMC Bioinformatics; 2012 Aug; 13():198. PubMed ID: 22883815
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10.
    Zhang Y
    Proteins; 2014 Feb; 82 Suppl 2(0 2):175-87. PubMed ID: 23760925
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins.
    Venclovas C; Margelevicius M
    Proteins; 2009; 77 Suppl 9():81-8. PubMed ID: 19639635
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling.
    Wang Q; Canutescu AA; Dunbrack RL
    Nat Protoc; 2008; 3(12):1832-47. PubMed ID: 18989261
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.