120 related articles for article (PubMed ID: 24589836)
1. A direct method for computing extreme value (Gumbel) parameters for gapped biological sequence alignments.
Quinn T; Sinkala Z
Int J Bioinform Res Appl; 2014; 10(2):177-89. PubMed ID: 24589836
[TBL] [Abstract][Full Text] [Related]
2. Significance of gapped sequence alignments.
Newberg LA
J Comput Biol; 2008 Nov; 15(9):1187-94. PubMed ID: 18973434
[TBL] [Abstract][Full Text] [Related]
3. Score distributions of gapped multiple sequence alignments down to the low-probability tail.
Fieth P; Hartmann AK
Phys Rev E; 2016 Aug; 94(2-1):022127. PubMed ID: 27627266
[TBL] [Abstract][Full Text] [Related]
4. The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment.
Sheetlin S; Park Y; Spouge JL
Nucleic Acids Res; 2005; 33(15):4987-94. PubMed ID: 16147981
[TBL] [Abstract][Full Text] [Related]
5. Toward an accurate statistics of gapped alignments.
Kschischo M; Lässig M; Yu YK
Bull Math Biol; 2005 Jan; 67(1):169-91. PubMed ID: 15691544
[TBL] [Abstract][Full Text] [Related]
6. Rapid significance estimation in local sequence alignment with gaps.
Bundschuh R
J Comput Biol; 2002; 9(2):243-60. PubMed ID: 12015880
[TBL] [Abstract][Full Text] [Related]
7. New Approximate Statistical Significance of Gapped Alignments Based on the Greedy Extension Model.
Karami A; Fayyaz Movaghar A; Mercier S; Ferre L
J Comput Biol; 2020 Sep; 27(9):1361-1372. PubMed ID: 31913652
[TBL] [Abstract][Full Text] [Related]
8. Island method for estimating the statistical significance of profile-profile alignment scores.
Poleksic A
BMC Bioinformatics; 2009 Apr; 10():112. PubMed ID: 19379500
[TBL] [Abstract][Full Text] [Related]
9. Approximate statistics of gapped alignments.
Mott R; Tribe R
J Comput Biol; 1999; 6(1):91-112. PubMed ID: 10223667
[TBL] [Abstract][Full Text] [Related]
10. Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment scores.
Bastien O; Maréchal E
BMC Bioinformatics; 2008 Aug; 9():332. PubMed ID: 18687111
[TBL] [Abstract][Full Text] [Related]
11. Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail.
Wolfsheimer S; Burghardt B; Hartmann AK
Algorithms Mol Biol; 2007 Jul; 2():9. PubMed ID: 17625018
[TBL] [Abstract][Full Text] [Related]
12. Statistical distributions of optimal global alignment scores of random protein sequences.
Pang H; Tang J; Chen SS; Tao S
BMC Bioinformatics; 2005 Oct; 6():257. PubMed ID: 16225696
[TBL] [Abstract][Full Text] [Related]
13. Calibrating E-values for hidden Markov models using reverse-sequence null models.
Karplus K; Karchin R; Shackelford G; Hughey R
Bioinformatics; 2005 Nov; 21(22):4107-15. PubMed ID: 16123115
[TBL] [Abstract][Full Text] [Related]
14. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
15. Accurate formula for P-values of gapped local sequence and profile alignments.
Mott R
J Mol Biol; 2000 Jul; 300(3):649-59. PubMed ID: 10884359
[TBL] [Abstract][Full Text] [Related]
16. Estimating and evaluating the statistics of gapped local-alignment scores.
Bailey TL; Gribskov M
J Comput Biol; 2002; 9(3):575-93. PubMed ID: 12162893
[TBL] [Abstract][Full Text] [Related]
17. Parameterized BLOSUM Matrices for Protein Alignment.
Song D; Chen J; Chen G; Li N; Li J; Fan J; Bu D; Li SC
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(3):686-94. PubMed ID: 26357279
[TBL] [Abstract][Full Text] [Related]
18. Statistical significance of probabilistic sequence alignment and related local hidden Markov models.
Yu YK; Hwa T
J Comput Biol; 2001; 8(3):249-82. PubMed ID: 11535176
[TBL] [Abstract][Full Text] [Related]
19. An efficient algorithm after ungapped analysis in BLAST.
Garg D; Saxena SC; Bhardwaj LM
DNA Seq; 2006 Aug; 17(4):247-53. PubMed ID: 17312943
[TBL] [Abstract][Full Text] [Related]
20. Rapid assessment of extremal statistics for gapped local alignment.
Olsen R; Bundschuh R; Hwa T
Proc Int Conf Intell Syst Mol Biol; 1999; ():211-22. PubMed ID: 10786304
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]