These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

144 related articles for article (PubMed ID: 24623815)

  • 1. The use of interatomic contact areas to quantify discrepancies between RNA 3D models and reference structures.
    Olechnovič K; Venclovas C
    Nucleic Acids Res; 2014 May; 42(9):5407-15. PubMed ID: 24623815
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quantitative analysis of nucleic acid three-dimensional structures.
    Gendron P; Lemieux S; Major F
    J Mol Biol; 2001 May; 308(5):919-36. PubMed ID: 11352582
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNAmap2D - calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures.
    Pietal MJ; Szostak N; Rother KM; Bujnicki JM
    BMC Bioinformatics; 2012 Dec; 13():333. PubMed ID: 23259794
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The role of nucleobase interactions in RNA structure and dynamics.
    Bottaro S; Di Palma F; Bussi G
    Nucleic Acids Res; 2014 Dec; 42(21):13306-14. PubMed ID: 25355509
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The influence of the local sequence environment on RNA loop structures.
    Schudoma C; Larhlimi A; Walther D
    RNA; 2011 Jul; 17(7):1247-57. PubMed ID: 21628431
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNA tertiary structure prediction in CASP15 by the GeneSilico group: Folding simulations based on statistical potentials and spatial restraints.
    Baulin EF; Mukherjee S; Moafinejad SN; Wirecki TK; Badepally NG; Jaryani F; Stefaniak F; Amiri Farsani M; Ray A; Rocha de Moura T; Bujnicki JM
    Proteins; 2023 Dec; 91(12):1800-1810. PubMed ID: 37622458
    [TBL] [Abstract][Full Text] [Related]  

  • 7. iFoldRNA v2: folding RNA with constraints.
    Krokhotin A; Houlihan K; Dokholyan NV
    Bioinformatics; 2015 Sep; 31(17):2891-3. PubMed ID: 25910700
    [TBL] [Abstract][Full Text] [Related]  

  • 8. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures.
    Sarver M; Zirbel CL; Stombaugh J; Mokdad A; Leontis NB
    J Math Biol; 2008 Jan; 56(1-2):215-52. PubMed ID: 17694311
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Extracting stacking interaction parameters for RNA from the data set of native structures.
    Dima RI; Hyeon C; Thirumalai D
    J Mol Biol; 2005 Mar; 347(1):53-69. PubMed ID: 15733917
    [TBL] [Abstract][Full Text] [Related]  

  • 10. QRNAS: software tool for refinement of nucleic acid structures.
    Stasiewicz J; Mukherjee S; Nithin C; Bujnicki JM
    BMC Struct Biol; 2019 Mar; 19(1):5. PubMed ID: 30898165
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Sequence dependent variations in RNA duplex are related to non-canonical hydrogen bond interactions in dinucleotide steps.
    Kailasam S; Bhattacharyya D; Bansal M
    BMC Res Notes; 2014 Feb; 7():83. PubMed ID: 24502340
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
    Butcher SE; Pyle AM
    Acc Chem Res; 2011 Dec; 44(12):1302-11. PubMed ID: 21899297
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Recognition of nucleic acid bases and base-pairs by hydrogen bonding to amino acid side-chains.
    Cheng AC; Chen WW; Fuhrmann CN; Frankel AD
    J Mol Biol; 2003 Apr; 327(4):781-96. PubMed ID: 12654263
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe in.
    Ditzler MA; Otyepka M; Sponer J; Walter NG
    Acc Chem Res; 2010 Jan; 43(1):40-7. PubMed ID: 19754142
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RNAJP: enhanced RNA 3D structure predictions with non-canonical interactions and global topology sampling.
    Li J; Chen SJ
    Nucleic Acids Res; 2023 Apr; 51(7):3341-3356. PubMed ID: 36864729
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Oxygen-aromatic contacts in intra-strand base pairs: analysis of high-resolution DNA crystal structures and quantum chemical calculations.
    Jain A; Krishna Deepak RNV; Sankararamakrishnan R
    J Struct Biol; 2014 Jul; 187(1):49-57. PubMed ID: 24816369
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.
    Burkard ME; Kierzek R; Turner DH
    J Mol Biol; 1999 Jul; 290(5):967-82. PubMed ID: 10438596
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CompAnnotate: a comparative approach to annotate base-pairing interactions in RNA 3D structures.
    Islam S; Ge P; Zhang S
    Nucleic Acids Res; 2017 Aug; 45(14):e136. PubMed ID: 28641399
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The energetics of small internal loops in RNA.
    Schroeder SJ; Burkard ME; Turner DH
    Biopolymers; 1999-2000; 52(4):157-67. PubMed ID: 11295748
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Base-intercalated and base-wedged stacking elements in 3D-structure of RNA and RNA-protein complexes.
    Baulin E; Metelev V; Bogdanov A
    Nucleic Acids Res; 2020 Sep; 48(15):8675-8685. PubMed ID: 32687167
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.