192 related articles for article (PubMed ID: 24639163)
1. Introduction to RNA secondary structure comparison.
Schirmer S; Ponty Y; Giegerich R
Methods Mol Biol; 2014; 1097():247-73. PubMed ID: 24639163
[TBL] [Abstract][Full Text] [Related]
2. The art of editing RNA structural alignments.
Andersen ES
Methods Mol Biol; 2014; 1097():379-94. PubMed ID: 24639168
[TBL] [Abstract][Full Text] [Related]
3. RNA structural alignments, part II: non-Sankoff approaches for structural alignments.
Asai K; Hamada M
Methods Mol Biol; 2014; 1097():291-301. PubMed ID: 24639165
[TBL] [Abstract][Full Text] [Related]
4. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
Washietl S; Bernhart SH; Kellis M
Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
[TBL] [Abstract][Full Text] [Related]
5. RNA structural alignments, part I: Sankoff-based approaches for structural alignments.
Havgaard JH; Gorodkin J
Methods Mol Biol; 2014; 1097():275-90. PubMed ID: 24639164
[TBL] [Abstract][Full Text] [Related]
6. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
Busch A; Backofen R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
[TBL] [Abstract][Full Text] [Related]
7. A method for aligning RNA secondary structures and its application to RNA motif detection.
Liu J; Wang JT; Hu J; Tian B
BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
[TBL] [Abstract][Full Text] [Related]
8. A new distance for high level RNA secondary structure comparison.
Allali J; Sagot MF
IEEE/ACM Trans Comput Biol Bioinform; 2005; 2(1):3-14. PubMed ID: 17044160
[TBL] [Abstract][Full Text] [Related]
9. A general edit distance between RNA structures.
Jiang T; Lin G; Ma B; Zhang K
J Comput Biol; 2002; 9(2):371-88. PubMed ID: 12015887
[TBL] [Abstract][Full Text] [Related]
10. An algorithm for searching RNA motifs in genomic sequences.
Liu J; Ma B; Zhang K
Biomol Eng; 2007 Sep; 24(3):343-50. PubMed ID: 17482512
[TBL] [Abstract][Full Text] [Related]
11. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Bioinformatics; 2005 Jun; 21(11):2611-7. PubMed ID: 15784748
[TBL] [Abstract][Full Text] [Related]
12. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Ferrè F; Ponty Y; Lorenz WA; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
[TBL] [Abstract][Full Text] [Related]
13. Aligning two RNA secondary structures with l-block.
Wang Z; Tillier ER
Biomol Eng; 2007 Sep; 24(3):321-6. PubMed ID: 17502167
[TBL] [Abstract][Full Text] [Related]
14. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
Mathews DH
Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
[TBL] [Abstract][Full Text] [Related]
15. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
Ji Y; Xu X; Stormo GD
Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926
[TBL] [Abstract][Full Text] [Related]
16. [A method for prediction of conserved RNA secondary structures].
Mironov AA
Mol Biol (Mosk); 2007; 41(4):711-8. PubMed ID: 17936993
[TBL] [Abstract][Full Text] [Related]
17. RNA-Pareto: interactive analysis of Pareto-optimal RNA sequence-structure alignments.
Schnattinger T; Schöning U; Marchfelder A; Kestler HA
Bioinformatics; 2013 Dec; 29(23):3102-4. PubMed ID: 24045774
[TBL] [Abstract][Full Text] [Related]
18. A local multiple alignment method for detection of non-coding RNA sequences.
Tabei Y; Asai K
Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
[TBL] [Abstract][Full Text] [Related]
19. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
Xu X; Ji Y; Stormo GD
Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756
[TBL] [Abstract][Full Text] [Related]
20. Efficient RNA pairwise structure comparison by SETTER method.
Hoksza D; Svozil D
Bioinformatics; 2012 Jul; 28(14):1858-64. PubMed ID: 22611129
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
