These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

102 related articles for article (PubMed ID: 24639169)

  • 1. Automated modeling of RNA 3D structure.
    Rother K; Rother M; Skiba P; Bujnicki JM
    Methods Mol Biol; 2014; 1097():395-415. PubMed ID: 24639169
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS.
    Piatkowski P; Kasprzak JM; Kumar D; Magnus M; Chojnowski G; Bujnicki JM
    Methods Mol Biol; 2016; 1490():217-35. PubMed ID: 27665602
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNA tertiary structure prediction with ModeRNA.
    Rother M; Rother K; Puton T; Bujnicki JM
    Brief Bioinform; 2011 Nov; 12(6):601-13. PubMed ID: 21896613
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ModeRNA: a tool for comparative modeling of RNA 3D structure.
    Rother M; Rother K; Puton T; Bujnicki JM
    Nucleic Acids Res; 2011 May; 39(10):4007-22. PubMed ID: 21300639
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ModeRNA server: an online tool for modeling RNA 3D structures.
    Rother M; Milanowska K; Puton T; Jeleniewicz J; Rother K; Bujnicki JM
    Bioinformatics; 2011 Sep; 27(17):2441-2. PubMed ID: 21727140
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An automated method for modeling proteins on known templates using distance geometry.
    Srinivasan S; March CJ; Sudarsanam S
    Protein Sci; 1993 Feb; 2(2):277-89. PubMed ID: 8443604
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Automated 3D RNA structure prediction using the RNAComposer method for riboswitches.
    Purzycka KJ; Popenda M; Szachniuk M; Antczak M; Lukasiak P; Blazewicz J; Adamiak RW
    Methods Enzymol; 2015; 553():3-34. PubMed ID: 25726459
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation.
    Kosinski J; Cymerman IA; Feder M; Kurowski MA; Sasin JM; Bujnicki JM
    Proteins; 2003; 53 Suppl 6():369-79. PubMed ID: 14579325
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Assessing model accuracy using the homology modeling automatically software.
    Bhattacharya A; Wunderlich Z; Monleon D; Tejero R; Montelione GT
    Proteins; 2008 Jan; 70(1):105-18. PubMed ID: 17640066
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNA 3D structure prediction: (1) assessing rna 3D structure similarity from 2D structure similarity.
    Barreda D C JE; Shigenobu Y; Ichiishi E; Del Carpio M CA
    Genome Inform; 2004; 15(2):112-20. PubMed ID: 15706497
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Prediction and design of DNA and RNA structures.
    Andersen ES
    N Biotechnol; 2010 Jul; 27(3):184-93. PubMed ID: 20193785
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A method for aligning RNA secondary structures and its application to RNA motif detection.
    Liu J; Wang JT; Hu J; Tian B
    BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB; Woods DA; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures.
    Antczak M; Zok T; Osowiecki M; Popenda M; Adamiak RW; Szachniuk M
    BMC Bioinformatics; 2018 Aug; 19(1):304. PubMed ID: 30134831
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Automated RNA 3D Structure Prediction with RNAComposer.
    Biesiada M; Purzycka KJ; Szachniuk M; Blazewicz J; Adamiak RW
    Methods Mol Biol; 2016; 1490():199-215. PubMed ID: 27665601
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA pseudoknot modeling using intersections of stochastic context free grammars with applications to database search.
    Brown M; Wilson C
    Pac Symp Biocomput; 1996; ():109-25. PubMed ID: 9390227
    [TBL] [Abstract][Full Text] [Related]  

  • 17. QRNAS: software tool for refinement of nucleic acid structures.
    Stasiewicz J; Mukherjee S; Nithin C; Bujnicki JM
    BMC Struct Biol; 2019 Mar; 19(1):5. PubMed ID: 30898165
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Refinement of unreliable local regions in template-based protein models.
    Park H; Seok C
    Proteins; 2012 Aug; 80(8):1974-86. PubMed ID: 22488760
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Vfold-Pipeline: a web server for RNA 3D structure prediction from sequences.
    Li J; Zhang S; Zhang D; Chen SJ
    Bioinformatics; 2022 Aug; 38(16):4042-4043. PubMed ID: 35758624
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Using Rosetta for RNA homology modeling.
    Watkins AM; Rangan R; Das R
    Methods Enzymol; 2019; 623():177-207. PubMed ID: 31239046
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.