BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

332 related articles for article (PubMed ID: 24646187)

  • 1. Metavir 2: new tools for viral metagenome comparison and assembled virome analysis.
    Roux S; Tournayre J; Mahul A; Debroas D; Enault F
    BMC Bioinformatics; 2014 Mar; 15():76. PubMed ID: 24646187
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Metavir: a web server dedicated to virome analysis.
    Roux S; Faubladier M; Mahul A; Paulhe N; Bernard A; Debroas D; Enault F
    Bioinformatics; 2011 Nov; 27(21):3074-5. PubMed ID: 21911332
    [TBL] [Abstract][Full Text] [Related]  

  • 3. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
    Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
    Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
    Vázquez-Castellanos JF; García-López R; Pérez-Brocal V; Pignatelli M; Moya A
    BMC Genomics; 2014 Jan; 15():37. PubMed ID: 24438450
    [TBL] [Abstract][Full Text] [Related]  

  • 5. VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences.
    Kieft K; Zhou Z; Anantharaman K
    Microbiome; 2020 Jun; 8(1):90. PubMed ID: 32522236
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics.
    Shi C; Beller L; Deboutte W; Yinda KC; Delang L; Vega-Rúa A; Failloux AB; Matthijnssens J
    Microbiome; 2019 Aug; 7(1):121. PubMed ID: 31462331
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
    Papudeshi B; Haggerty JM; Doane M; Morris MM; Walsh K; Beattie DT; Pande D; Zaeri P; Silva GGZ; Thompson F; Edwards RA; Dinsdale EA
    BMC Genomics; 2017 Nov; 18(1):915. PubMed ID: 29183281
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
    Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
    Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CheckV assesses the quality and completeness of metagenome-assembled viral genomes.
    Nayfach S; Camargo AP; Schulz F; Eloe-Fadrosh E; Roux S; Kyrpides NC
    Nat Biotechnol; 2021 May; 39(5):578-585. PubMed ID: 33349699
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Hecatomb: an integrated software platform for viral metagenomics.
    Roach MJ; Beecroft SJ; Mihindukulasuriya KA; Wang L; Paredes A; Cárdenas LAC; Henry-Cocks K; Lima LFO; Dinsdale EA; Edwards RA; Handley SA
    Gigascience; 2024 Jan; 13():. PubMed ID: 38832467
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data.
    Deng Z; Delwart E
    BMC Bioinformatics; 2021 Mar; 22(1):119. PubMed ID: 33706720
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing data.
    Ho SFS; Wheeler NE; Millard AD; van Schaik W
    Microbiome; 2023 Apr; 11(1):84. PubMed ID: 37085924
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Deciphering the Human Virome with Single-Virus Genomics and Metagenomics.
    de la Cruz Peña MJ; Martinez-Hernandez F; Garcia-Heredia I; Lluesma Gomez M; Fornas Ò; Martinez-Garcia M
    Viruses; 2018 Mar; 10(3):. PubMed ID: 29509721
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
    Wang Y; Leung H; Yiu S; Chin F
    BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses.
    Tangherlini M; Dell'Anno A; Zeigler Allen L; Riccioni G; Corinaldesi C
    Sci Rep; 2016 Jun; 6():28428. PubMed ID: 27329207
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
    García-López R; Vázquez-Castellanos JF; Moya A
    Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
    [TBL] [Abstract][Full Text] [Related]  

  • 17. VIROME: a standard operating procedure for analysis of viral metagenome sequences.
    Wommack KE; Bhavsar J; Polson SW; Chen J; Dumas M; Srinivasiah S; Furman M; Jamindar S; Nasko DJ
    Stand Genomic Sci; 2012 Jul; 6(3):427-39. PubMed ID: 23407591
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
    Kieser S; Brown J; Zdobnov EM; Trajkovski M; McCue LA
    BMC Bioinformatics; 2020 Jun; 21(1):257. PubMed ID: 32571209
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
    Zakrzewski M; Bekel T; Ander C; Pühler A; Rupp O; Stoye J; Schlüter A; Goesmann A
    J Biotechnol; 2013 Aug; 167(2):156-65. PubMed ID: 23026555
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SprayNPray: user-friendly taxonomic profiling of genome and metagenome contigs.
    Garber AI; Armbruster CR; Lee SE; Cooper VS; Bomberger JM; McAllister SM
    BMC Genomics; 2022 Mar; 23(1):202. PubMed ID: 35279076
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.