These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

171 related articles for article (PubMed ID: 24648041)

  • 1. Basin Hopping Graph: a computational framework to characterize RNA folding landscapes.
    Kucharík M; Hofacker IL; Stadler PF; Qin J
    Bioinformatics; 2014 Jul; 30(14):2009-17. PubMed ID: 24648041
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Pseudoknots in RNA folding landscapes.
    Kucharík M; Hofacker IL; Stadler PF; Qin J
    Bioinformatics; 2016 Jan; 32(2):187-94. PubMed ID: 26428288
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Memory-efficient RNA energy landscape exploration.
    Mann M; Kucharík M; Flamm C; Wolfinger MT
    Bioinformatics; 2014 Sep; 30(18):2584-91. PubMed ID: 24833804
    [TBL] [Abstract][Full Text] [Related]  

  • 4. pourRNA-a time- and memory-efficient approach for the guided exploration of RNA energy landscapes.
    Entzian G; Raden M
    Bioinformatics; 2020 Jan; 36(2):462-469. PubMed ID: 31350881
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Folding RNA/DNA hybrid duplexes.
    Lorenz R; Hofacker IL; Bernhart SH
    Bioinformatics; 2012 Oct; 28(19):2530-1. PubMed ID: 22829626
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient approximations of RNA kinetics landscape using non-redundant sampling.
    Michálik J; Touzet H; Ponty Y
    Bioinformatics; 2017 Jul; 33(14):i283-i292. PubMed ID: 28882001
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Predicting folding pathways between RNA conformational structures guided by RNA stacks.
    Li Y; Zhang S
    BMC Bioinformatics; 2012 Mar; 13 Suppl 3(Suppl 3):S5. PubMed ID: 22536903
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Analysing RNA-kinetics based on folding space abstraction.
    Huang J; Voß B
    BMC Bioinformatics; 2014 Feb; 15():60. PubMed ID: 24575751
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computational design of RNAs with complex energy landscapes.
    Höner zu Siederdissen C; Hammer S; Abfalter I; Hofacker IL; Flamm C; Stadler PF
    Biopolymers; 2013 Dec; 99(12):1124-36. PubMed ID: 23818234
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Network Properties of the Ensemble of RNA Structures.
    Clote P; Bayegan A
    PLoS One; 2015; 10(10):e0139476. PubMed ID: 26488894
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SHAPE directed RNA folding.
    Lorenz R; Luntzer D; Hofacker IL; Stadler PF; Wolfinger MT
    Bioinformatics; 2016 Jan; 32(1):145-7. PubMed ID: 26353838
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Energy-directed RNA structure prediction.
    Hofacker IL
    Methods Mol Biol; 2014; 1097():71-84. PubMed ID: 24639155
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures.
    Bleckley S; Stone JW; Schroeder SJ
    PLoS One; 2012; 7(12):e52414. PubMed ID: 23300665
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Coarse-Grained HiRE-RNA Model for ab Initio RNA Folding beyond Simple Molecules, Including Noncanonical and Multiple Base Pairings.
    Cragnolini T; Laurin Y; Derreumaux P; Pasquali S
    J Chem Theory Comput; 2015 Jul; 11(7):3510-22. PubMed ID: 26575783
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Partition function and base pairing probabilities for RNA-RNA interaction prediction.
    Huang FW; Qin J; Reidys CM; Stadler PF
    Bioinformatics; 2009 Oct; 25(20):2646-54. PubMed ID: 19671692
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computing energy landscape maps and structural excursions of proteins.
    Sapin E; Carr DB; De Jong KA; Shehu A
    BMC Genomics; 2016 Aug; 17 Suppl 4(Suppl 4):546. PubMed ID: 27535545
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Design of RNAs: comparing programs for inverse RNA folding.
    Churkin A; Retwitzer MD; Reinharz V; Ponty Y; Waldispühl J; Barash D
    Brief Bioinform; 2018 Mar; 19(2):350-358. PubMed ID: 28049135
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Thermodynamic and kinetic folding of riboswitches.
    Badelt S; Hammer S; Flamm C; Hofacker IL
    Methods Enzymol; 2015; 553():193-213. PubMed ID: 25726466
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast, approximate kinetics of RNA folding.
    Senter E; Clote P
    J Comput Biol; 2015 Feb; 22(2):124-44. PubMed ID: 25684201
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design.
    Garcia-Martin JA; Clote P; Dotu I
    J Bioinform Comput Biol; 2013 Apr; 11(2):1350001. PubMed ID: 23600819
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.