BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

201 related articles for article (PubMed ID: 24659253)

  • 1. Midpoint cell method for hybrid (MPI+OpenMP) parallelization of molecular dynamics simulations.
    Jung J; Mori T; Sugita Y
    J Comput Chem; 2014 May; 35(14):1064-72. PubMed ID: 24659253
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The midpoint method for parallelization of particle simulations.
    Bowers KJ; Dror RO; Shaw DE
    J Chem Phys; 2006 May; 124(18):184109. PubMed ID: 16709099
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hybrid Message-Passing Interface-Open Multiprocessing Accelerated Euler-Lagrange Simulations of Microbubble Enhanced HIFU for Tumor Ablation.
    Ma J; Deng X; Hsiao CT; Chahine GL
    J Biomech Eng; 2023 Jul; 145(7):. PubMed ID: 36897623
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Graphics Processing Unit Acceleration and Parallelization of GENESIS for Large-Scale Molecular Dynamics Simulations.
    Jung J; Naurse A; Kobayashi C; Sugita Y
    J Chem Theory Comput; 2016 Oct; 12(10):4947-4958. PubMed ID: 27631425
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multiple program/multiple data molecular dynamics method with multiple time step integrator for large biological systems.
    Jung J; Sugita Y
    J Comput Chem; 2017 Jun; 38(16):1410-1418. PubMed ID: 27709646
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Systematic benchmarking of large molecular dynamics simulations employing GROMACS on massive multiprocessing facilities.
    Gruber CC; Pleiss J
    J Comput Chem; 2011 Mar; 32(4):600-6. PubMed ID: 20812321
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Hybrid particle-field molecular dynamics simulations: parallelization and benchmarks.
    Zhao Y; De Nicola A; Kawakatsu T; Milano G
    J Comput Chem; 2012 Mar; 33(8):868-80. PubMed ID: 22278759
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations.
    Jung J; Mori T; Kobayashi C; Matsunaga Y; Yoda T; Feig M; Sugita Y
    Wiley Interdiscip Rev Comput Mol Sci; 2015 Jul; 5(4):310-323. PubMed ID: 26753008
    [TBL] [Abstract][Full Text] [Related]  

  • 9. [Series: Medical Applications of the PHITS Code (2): Acceleration by Parallel Computing].
    Furuta T; Sato T
    Igaku Butsuri; 2015; 35(3):264-8. PubMed ID: 27125134
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Performance of hybrid programming models for multiscale cardiac simulations: preparing for petascale computation.
    Pope BJ; Fitch BG; Pitman MC; Rice JJ; Reumann M
    IEEE Trans Biomed Eng; 2011 Oct; 58(10):2965-9. PubMed ID: 21768044
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms.
    Barash D; Yang L; Qian X; Schlick T
    J Comput Chem; 2003 Jan; 24(1):77-88. PubMed ID: 12483677
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Pairwise verlet lists: combining cell lists and verlet lists to improve memory locality and parallelism.
    Gonnet P
    J Comput Chem; 2012 Jan; 33(1):76-81. PubMed ID: 21952937
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Acceleration of Semiempirical QM/MM Methods through Message Passage Interface (MPI), Hybrid MPI/Open Multiprocessing, and Self-Consistent Field Accelerator Implementations.
    Ojeda-May P; Nam K
    J Chem Theory Comput; 2017 Aug; 13(8):3525-3536. PubMed ID: 28628742
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Hybrid MPI-OpenMP Parallelism in the ONETEP Linear-Scaling Electronic Structure Code: Application to the Delamination of Cellulose Nanofibrils.
    Wilkinson KA; Hine ND; Skylaris CK
    J Chem Theory Comput; 2014 Nov; 10(11):4782-94. PubMed ID: 26584365
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Hybrid MPI/OpenMP parallelization of the effective fragment potential method in the libefp software library.
    Kaliman IA; Slipchenko LV
    J Comput Chem; 2015 Jan; 36(2):129-35. PubMed ID: 25394274
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DL_POLY_3: the CCP5 national UK code for molecular-dynamics simulations.
    Todorov IT; Smith W
    Philos Trans A Math Phys Eng Sci; 2004 Sep; 362(1822):1835-52. PubMed ID: 15306418
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Optimization of parameters for molecular dynamics simulation using smooth particle-mesh Ewald in GROMACS 4.5.
    Abraham MJ; Gready JE
    J Comput Chem; 2011 Jul; 32(9):2031-40. PubMed ID: 21469158
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MPI/OpenMP hybrid parallel algorithm for resolution of identity second-order Møller-Plesset perturbation calculation of analytical energy gradient for massively parallel multicore supercomputers.
    Katouda M; Nakajima T
    J Comput Chem; 2017 Mar; 38(8):489-507. PubMed ID: 28133838
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Hybrid MPI/OpenMP Implementation of the ORAC Molecular Dynamics Program for Generalized Ensemble and Fast Switching Alchemical Simulations.
    Procacci P
    J Chem Inf Model; 2016 Jun; 56(6):1117-21. PubMed ID: 27231982
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Extending molecular simulation time scales: Parallel in time integrations for high-level quantum chemistry and complex force representations.
    Bylaska EJ; Weare JQ; Weare JH
    J Chem Phys; 2013 Aug; 139(7):074114. PubMed ID: 23968079
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.