BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

186 related articles for article (PubMed ID: 24659499)

  • 1. jmzTab: a java interface to the mzTab data standard.
    Xu QW; Griss J; Wang R; Jones AR; Hermjakob H; Vizcaíno JA
    Proteomics; 2014 Jun; 14(11):1328-32. PubMed ID: 24659499
    [TBL] [Abstract][Full Text] [Related]  

  • 2. jmzTab-M: A Reference Parser, Writer, and Validator for the Proteomics Standards Initiative mzTab 2.0 Metabolomics Standard.
    Hoffmann N; Hartler J; Ahrends R
    Anal Chem; 2019 Oct; 91(20):12615-12618. PubMed ID: 31525911
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The jmzQuantML programming interface and validator for the mzQuantML data standard.
    Qi D; Krishna R; Jones AR
    Proteomics; 2014 Mar; 14(6):685-8. PubMed ID: 24453188
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.
    Griss J; Jones AR; Sachsenberg T; Walzer M; Gatto L; Hartler J; Thallinger GG; Salek RM; Steinbeck C; Neuhauser N; Cox J; Neumann S; Fan J; Reisinger F; Xu QW; Del Toro N; Pérez-Riverol Y; Ghali F; Bandeira N; Xenarios I; Kohlbacher O; Vizcaíno JA; Hermjakob H
    Mol Cell Proteomics; 2014 Oct; 13(10):2765-75. PubMed ID: 24980485
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ms-data-core-api: an open-source, metadata-oriented library for computational proteomics.
    Perez-Riverol Y; Uszkoreit J; Sanchez A; Ternent T; Del Toro N; Hermjakob H; Vizcaíno JA; Wang R
    Bioinformatics; 2015 Sep; 31(17):2903-5. PubMed ID: 25910694
    [TBL] [Abstract][Full Text] [Related]  

  • 6. mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics.
    Hoffmann N; Rein J; Sachsenberg T; Hartler J; Haug K; Mayer G; Alka O; Dayalan S; Pearce JTM; Rocca-Serra P; Qi D; Eisenacher M; Perez-Riverol Y; Vizcaíno JA; Salek RM; Neumann S; Jones AR
    Anal Chem; 2019 Mar; 91(5):3302-3310. PubMed ID: 30688441
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard.
    Qi D; Zhang H; Fan J; Perkins S; Pisconti A; Simpson DM; Bessant C; Hubbard S; Jones AR
    Proteomics; 2015 Sep; 15(18):3152-62. PubMed ID: 26037908
    [TBL] [Abstract][Full Text] [Related]  

  • 8. jmzML, an open-source Java API for mzML, the PSI standard for MS data.
    Côté RG; Reisinger F; Martens L
    Proteomics; 2010 Apr; 10(7):1332-5. PubMed ID: 20127693
    [TBL] [Abstract][Full Text] [Related]  

  • 9. jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats.
    Griss J; Reisinger F; Hermjakob H; Vizcaíno JA
    Proteomics; 2012 Mar; 12(6):795-8. PubMed ID: 22539430
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium.
    Côté RG; Griss J; Dianes JA; Wang R; Wright JC; van den Toorn HW; van Breukelen B; Heck AJ; Hulstaert N; Martens L; Reisinger F; Csordas A; Ovelleiro D; Perez-Rivevol Y; Barsnes H; Hermjakob H; Vizcaíno JA
    Mol Cell Proteomics; 2012 Dec; 11(12):1682-9. PubMed ID: 22949509
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets.
    Perez-Riverol Y; Xu QW; Wang R; Uszkoreit J; Griss J; Sanchez A; Reisinger F; Csordas A; Ternent T; Del-Toro N; Dianes JA; Eisenacher M; Hermjakob H; Vizcaíno JA
    Mol Cell Proteomics; 2016 Jan; 15(1):305-17. PubMed ID: 26545397
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Toward a Sample Metadata Standard in Public Proteomics Repositories.
    Perez-Riverol Y;
    J Proteome Res; 2020 Oct; 19(10):3906-3909. PubMed ID: 32786688
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PRIDEViewer: a novel user-friendly interface to visualize PRIDE XML files.
    Medina-Aunon JA; Carazo JM; Albar JP
    Proteomics; 2011 Jan; 11(2):334-7. PubMed ID: 21204261
    [TBL] [Abstract][Full Text] [Related]  

  • 14. XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.
    Muth T; Vaudel M; Barsnes H; Martens L; Sickmann A
    Proteomics; 2010 Apr; 10(7):1522-4. PubMed ID: 20140905
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Pride-asap: automatic fragment ion annotation of identified PRIDE spectra.
    Hulstaert N; Reisinger F; Rameseder J; Barsnes H; Vizcaíno JA; Martens L
    J Proteomics; 2013 Dec; 95(100):89-92. PubMed ID: 23603108
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.
    Deutsch EW; Orchard S; Binz PA; Bittremieux W; Eisenacher M; Hermjakob H; Kawano S; Lam H; Mayer G; Menschaert G; Perez-Riverol Y; Salek RM; Tabb DL; Tenzer S; Vizcaíno JA; Walzer M; Jones AR
    J Proteome Res; 2017 Dec; 16(12):4288-4298. PubMed ID: 28849660
    [TBL] [Abstract][Full Text] [Related]  

  • 17. mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements.
    Bhamber RS; Jankevics A; Deutsch EW; Jones AR; Dowsey AW
    J Proteome Res; 2021 Jan; 20(1):172-183. PubMed ID: 32864978
    [TBL] [Abstract][Full Text] [Related]  

  • 18. TOPPView: an open-source viewer for mass spectrometry data.
    Sturm M; Kohlbacher O
    J Proteome Res; 2009 Jul; 8(7):3760-3. PubMed ID: 19425593
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A tutorial for software development in quantitative proteomics using PSI standard formats.
    Gonzalez-Galarza FF; Qi D; Fan J; Bessant C; Jones AR
    Biochim Biophys Acta; 2014 Jan; 1844(1 Pt A):88-97. PubMed ID: 23584085
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany.
    Orchard S; Albar JP; Binz PA; Kettner C; Jones AR; Salek RM; Vizcaino JA; Deutsch EW; Hermjakob H
    Proteomics; 2014 Nov; 14(21-22):2363-8. PubMed ID: 25297050
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.