BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

179 related articles for article (PubMed ID: 24676893)

  • 1. Hexicon 2: automated processing of hydrogen-deuterium exchange mass spectrometry data with improved deuteration distribution estimation.
    Lindner R; Lou X; Reinstein J; Shoeman RL; Hamprecht FA; Winkler A
    J Am Soc Mass Spectrom; 2014 Jun; 25(6):1018-28. PubMed ID: 24676893
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Deuteration distribution estimation with improved sequence coverage for HX/MS experiments.
    Lou X; Kirchner M; Renard BY; Köthe U; Boppel S; Graf C; Lee CT; Steen JA; Steen H; Mayer MP; Hamprecht FA
    Bioinformatics; 2010 Jun; 26(12):1535-41. PubMed ID: 20439256
    [TBL] [Abstract][Full Text] [Related]  

  • 3. "TOF2H": a precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis.
    Nikamanon P; Pun E; Chou W; Koter MD; Gershon PD
    BMC Bioinformatics; 2008 Sep; 9():387. PubMed ID: 18803853
    [TBL] [Abstract][Full Text] [Related]  

  • 4. QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with resolved isotopic fine structure.
    Salisbury JP; Liu Q; Agar JN
    BMC Bioinformatics; 2014 Dec; 15(1):403. PubMed ID: 25495703
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Determination of Equine Cytochrome c Backbone Amide Hydrogen/Deuterium Exchange Rates by Mass Spectrometry Using a Wider Time Window and Isotope Envelope.
    Hamuro Y
    J Am Soc Mass Spectrom; 2017 Mar; 28(3):486-497. PubMed ID: 28108962
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Improved sequence resolution by global analysis of overlapped peptides in hydrogen/deuterium exchange mass spectrometry.
    Fajer PG; Bou-Assaf GM; Marshall AG
    J Am Soc Mass Spectrom; 2012 Jul; 23(7):1202-8. PubMed ID: 22528203
    [TBL] [Abstract][Full Text] [Related]  

  • 7. HDX workbench: software for the analysis of H/D exchange MS data.
    Pascal BD; Willis S; Lauer JL; Landgraf RR; West GM; Marciano D; Novick S; Goswami D; Chalmers MJ; Griffin PR
    J Am Soc Mass Spectrom; 2012 Sep; 23(9):1512-21. PubMed ID: 22692830
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data.
    Pascal BD; Chalmers MJ; Busby SA; Mader CC; Southern MR; Tsinoremas NF; Griffin PR
    BMC Bioinformatics; 2007 May; 8():156. PubMed ID: 17506883
    [TBL] [Abstract][Full Text] [Related]  

  • 9. HDX-analyzer: a novel package for statistical analysis of protein structure dynamics.
    Liu S; Liu L; Uzuner U; Zhou X; Gu M; Shi W; Zhang Y; Dai SY; Yuan JS
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S43. PubMed ID: 21342575
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Feature based retention time alignment for improved HDX MS analysis.
    Venable JD; Scuba W; Brock A
    J Am Soc Mass Spectrom; 2013 Apr; 24(4):642-5. PubMed ID: 23430702
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.
    Slysz GW; Baker CA; Bozsa BM; Dang A; Percy AJ; Bennett M; Schriemer DC
    BMC Bioinformatics; 2009 May; 10():162. PubMed ID: 19473537
    [TBL] [Abstract][Full Text] [Related]  

  • 12. HDXFinder: automated analysis and data reporting of deuterium/hydrogen exchange mass spectrometry.
    Miller DE; Prasannan CB; Villar MT; Fenton AW; Artigues A
    J Am Soc Mass Spectrom; 2012 Feb; 23(2):425-9. PubMed ID: 22083588
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Resolution of protein hydrogen/deuterium exchange by fitting amide exchange probabilities to the peptide isotopic envelopes.
    Babić D; Kazazić S; Smith DM
    Rapid Commun Mass Spectrom; 2019 Aug; 33(15):1248-1257. PubMed ID: 31034666
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Two-Site Evaluation of the Repeatability and Precision of an Automated Dual-Column Hydrogen/Deuterium Exchange Mass Spectrometry Platform.
    Cummins DJ; Espada A; Novick SJ; Molina-Martin M; Stites RE; Espinosa JF; Broughton H; Goswami D; Pascal BD; Dodge JA; Chalmers MJ; Griffin PR
    Anal Chem; 2016 Jun; 88(12):6607-14. PubMed ID: 27224086
    [TBL] [Abstract][Full Text] [Related]  

  • 15. UV Photodissociation Mass Spectrometry Accurately Localize Sites of Backbone Deuteration in Peptides.
    Mistarz UH; Bellina B; Jensen PF; Brown JM; Barran PE; Rand KD
    Anal Chem; 2018 Jan; 90(2):1077-1080. PubMed ID: 29266933
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Automated extraction of backbone deuteration levels from amide H/2H mass spectrometry experiments.
    Hotchko M; Anand GS; Komives EA; Ten Eyck LF
    Protein Sci; 2006 Mar; 15(3):583-601. PubMed ID: 16501228
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improved protein hydrogen/deuterium exchange mass spectrometry platform with fully automated data processing.
    Zhang Z; Zhang A; Xiao G
    Anal Chem; 2012 Jun; 84(11):4942-9. PubMed ID: 22571272
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HDX match software for the data analysis of top-down ECD-FTMS hydrogen/deuterium exchange experiments.
    Petrotchenko EV; Borchers CH
    J Am Soc Mass Spectrom; 2015 Nov; 26(11):1895-8. PubMed ID: 26162650
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Analysis of overlapped and noisy hydrogen/deuterium exchange mass spectra.
    Guttman M; Weis DD; Engen JR; Lee KK
    J Am Soc Mass Spectrom; 2013 Dec; 24(12):1906-12. PubMed ID: 24018862
    [TBL] [Abstract][Full Text] [Related]  

  • 20. High-Resolution Hydrogen-Deuterium Protection Factors from Sparse Mass Spectrometry Data Validated by Nuclear Magnetic Resonance Measurements.
    Stofella M; Skinner SP; Sobott F; Houwing-Duistermaat J; Paci E
    J Am Soc Mass Spectrom; 2022 May; 33(5):813-822. PubMed ID: 35385652
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.