111 related articles for article (PubMed ID: 24677372)
1. Comparative analysis of sequence covariation methods to mine evolutionary hubs: examples from selected GPCR families.
Pelé J; Moreau M; Abdi H; Rodien P; Castel H; Chabbert M
Proteins; 2014 Sep; 82(9):2141-56. PubMed ID: 24677372
[TBL] [Abstract][Full Text] [Related]
2. Contributions of residue pairing to beta-sheet formation: conservation and covariation of amino acid residue pairs on antiparallel beta-strands.
Mandel-Gutfreund Y; Zaremba SM; Gregoret LM
J Mol Biol; 2001 Feb; 305(5):1145-59. PubMed ID: 11162120
[TBL] [Abstract][Full Text] [Related]
3. Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions.
Larson SM; Di Nardo AA; Davidson AR
J Mol Biol; 2000 Oct; 303(3):433-46. PubMed ID: 11031119
[TBL] [Abstract][Full Text] [Related]
4. Structure-Based Sequence Alignment of the Transmembrane Domains of All Human GPCRs: Phylogenetic, Structural and Functional Implications.
Cvicek V; Goddard WA; Abrol R
PLoS Comput Biol; 2016 Mar; 12(3):e1004805. PubMed ID: 27028541
[TBL] [Abstract][Full Text] [Related]
5. Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction.
Dunn SD; Wahl LM; Gloor GB
Bioinformatics; 2008 Feb; 24(3):333-40. PubMed ID: 18057019
[TBL] [Abstract][Full Text] [Related]
6. Genome wide survey of G protein-coupled receptors in Tetraodon nigroviridis.
Metpally RP; Sowdhamini R
BMC Evol Biol; 2005 Jul; 5():41. PubMed ID: 16022726
[TBL] [Abstract][Full Text] [Related]
7. Functionally compensating coevolving positions are neither homoplasic nor conserved in clades.
Gloor GB; Tyagi G; Abrassart DM; Kingston AJ; Fernandes AD; Dunn SD; Brandl CJ
Mol Biol Evol; 2010 May; 27(5):1181-91. PubMed ID: 20065119
[TBL] [Abstract][Full Text] [Related]
8. Intramolecular allosteric communication in dopamine D2 receptor revealed by evolutionary amino acid covariation.
Sung YM; Wilkins AD; Rodriguez GJ; Wensel TG; Lichtarge O
Proc Natl Acad Sci U S A; 2016 Mar; 113(13):3539-44. PubMed ID: 26979958
[TBL] [Abstract][Full Text] [Related]
9. Statistical analysis and prediction of functional residues effective for GPCR-G-protein coupling selectivity.
Muramatsu T; Suwa M
Protein Eng Des Sel; 2006 Jun; 19(6):277-83. PubMed ID: 16565146
[TBL] [Abstract][Full Text] [Related]
10. CovET: A covariation-evolutionary trace method that identifies protein structure-function modules.
Konecki DM; Hamrick S; Wang C; Agosto MA; Wensel TG; Lichtarge O
J Biol Chem; 2023 Jul; 299(7):104896. PubMed ID: 37290531
[TBL] [Abstract][Full Text] [Related]
11. G protein-coupled time travel: evolutionary aspects of GPCR research.
Römpler H; Stäubert C; Thor D; Schulz A; Hofreiter M; Schöneberg T
Mol Interv; 2007 Feb; 7(1):17-25. PubMed ID: 17339603
[TBL] [Abstract][Full Text] [Related]
12. Evolution of the class C GPCR Venus flytrap modules involved positive selected functional divergence.
Cao J; Huang S; Qian J; Huang J; Jin L; Su Z; Yang J; Liu J
BMC Evol Biol; 2009 Mar; 9():67. PubMed ID: 19323848
[TBL] [Abstract][Full Text] [Related]
13. Amino acid positions subject to multiple coevolutionary constraints can be robustly identified by their eigenvector network centrality scores.
Parente DJ; Ray JC; Swint-Kruse L
Proteins; 2015 Dec; 83(12):2293-306. PubMed ID: 26503808
[TBL] [Abstract][Full Text] [Related]
14. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
15. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
[TBL] [Abstract][Full Text] [Related]
16. A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.
Dekker JP; Fodor A; Aldrich RW; Yellen G
Bioinformatics; 2004 Jul; 20(10):1565-72. PubMed ID: 14962924
[TBL] [Abstract][Full Text] [Related]
17. Computational studies of Family A and Family B GPCRs.
Vohra S; Chintapalli SV; Illingworth CJ; Reeves PJ; Mullineaux PM; Clark HS; Dean MK; Upton GJ; Reynolds CA
Biochem Soc Trans; 2007 Aug; 35(Pt 4):749-54. PubMed ID: 17635140
[TBL] [Abstract][Full Text] [Related]
18. Detection of pairwise residue proximity by covariation analysis for 3D-structure prediction of G-protein-coupled receptors.
Nemoto W; Imai T; Takahashi T; Kikuchi T; Fujita N
Protein J; 2004 Aug; 23(6):427-35. PubMed ID: 15517989
[TBL] [Abstract][Full Text] [Related]
19. Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences.
Fukami-Kobayashi K; Schreiber DR; Benner SA
J Mol Biol; 2002 Jun; 319(3):729-43. PubMed ID: 12054866
[TBL] [Abstract][Full Text] [Related]
20. Bioinformatics tools for predicting GPCR gene functions.
Suwa M
Adv Exp Med Biol; 2014; 796():205-24. PubMed ID: 24158807
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
