208 related articles for article (PubMed ID: 24683424)
1. DelPhi Web Server: A comprehensive online suite for electrostatic calculations of biological macromolecules and their complexes.
Sarkar S; Witham S; Zhang J; Zhenirovskyy M; Rocchia W; Alexov E
Commun Comput Phys; 2013 Jan; 13(1):269-284. PubMed ID: 24683424
[TBL] [Abstract][Full Text] [Related]
2. DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol.
Smith N; Witham S; Sarkar S; Zhang J; Li L; Li C; Alexov E
Bioinformatics; 2012 Jun; 28(12):1655-7. PubMed ID: 22531215
[TBL] [Abstract][Full Text] [Related]
3. DelPhi: a comprehensive suite for DelPhi software and associated resources.
Li L; Li C; Sarkar S; Zhang J; Witham S; Zhang Z; Wang L; Smith N; Petukh M; Alexov E
BMC Biophys; 2012 May; 5():9. PubMed ID: 22583952
[TBL] [Abstract][Full Text] [Related]
4. DelPhiPKa web server: predicting pKa of proteins, RNAs and DNAs.
Wang L; Zhang M; Alexov E
Bioinformatics; 2016 Feb; 32(4):614-5. PubMed ID: 26515825
[TBL] [Abstract][Full Text] [Related]
5. DelPhiForce web server: electrostatic forces and energy calculations and visualization.
Li L; Jia Z; Peng Y; Chakravorty A; Sun L; Alexov E
Bioinformatics; 2017 Nov; 33(22):3661-3663. PubMed ID: 29036596
[TBL] [Abstract][Full Text] [Related]
6. SMPBS: Web server for computing biomolecular electrostatics using finite element solvers of size modified Poisson-Boltzmann equation.
Xie Y; Ying J; Xie D
J Comput Chem; 2017 Mar; 38(8):541-552. PubMed ID: 28052351
[TBL] [Abstract][Full Text] [Related]
7. Statistical investigation of surface bound ions and further development of BION server to include pH and salt dependence.
Petukh M; Zhang M; Alexov E
J Comput Chem; 2015 Dec; 36(32):2381-93. PubMed ID: 26484964
[TBL] [Abstract][Full Text] [Related]
8. DelPhiForce, a tool for electrostatic force calculations: Applications to macromolecular binding.
Li L; Chakravorty A; Alexov E
J Comput Chem; 2017 Apr; 38(9):584-593. PubMed ID: 28130775
[TBL] [Abstract][Full Text] [Related]
9. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.
Dolinsky TJ; Nielsen JE; McCammon JA; Baker NA
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W665-7. PubMed ID: 15215472
[TBL] [Abstract][Full Text] [Related]
10. Protein Repair and Analysis Server: A Web Server to Repair PDB Structures, Add Missing Heavy Atoms and Hydrogen Atoms, and Assign Secondary Structures by Amide Interactions.
Nnyigide OS; Nnyigide TO; Lee SG; Hyun K
J Chem Inf Model; 2022 Sep; 62(17):4232-4246. PubMed ID: 36000562
[TBL] [Abstract][Full Text] [Related]
11. PBEQ-Solver for online visualization of electrostatic potential of biomolecules.
Jo S; Vargyas M; Vasko-Szedlar J; Roux B; Im W
Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W270-5. PubMed ID: 18508808
[TBL] [Abstract][Full Text] [Related]
12. WebSTAR3D: a web server for RNA 3D structural alignment.
Holzhauser E; Ge P; Zhang S
Bioinformatics; 2016 Dec; 32(23):3673-3675. PubMed ID: 27497443
[TBL] [Abstract][Full Text] [Related]
13. Continuous development of schemes for parallel computing of the electrostatics in biological systems: implementation in DelPhi.
Li C; Petukh M; Li L; Alexov E
J Comput Chem; 2013 Aug; 34(22):1949-60. PubMed ID: 23733490
[TBL] [Abstract][Full Text] [Related]
14. Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling.
Smith N; Campbell B; Li L; Li C; Alexov E
BMC Struct Biol; 2012 Dec; 12():31. PubMed ID: 23217202
[TBL] [Abstract][Full Text] [Related]
15. PCE: web tools to compute protein continuum electrostatics.
Miteva MA; Tufféry P; Villoutreix BO
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W372-5. PubMed ID: 15980492
[TBL] [Abstract][Full Text] [Related]
16. Patch Finder Plus (PFplus): a web server for extracting and displaying positive electrostatic patches on protein surfaces.
Shazman S; Celniker G; Haber O; Glaser F; Mandel-Gutfreund Y
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W526-30. PubMed ID: 17537808
[TBL] [Abstract][Full Text] [Related]
17. H++: a server for estimating pKas and adding missing hydrogens to macromolecules.
Gordon JC; Myers JB; Folta T; Shoja V; Heath LS; Onufriev A
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W368-71. PubMed ID: 15980491
[TBL] [Abstract][Full Text] [Related]
18. An accelerated nonlocal Poisson-Boltzmann equation solver for electrostatics of biomolecule.
Ying J; Xie D
Int J Numer Method Biomed Eng; 2018 Nov; 34(11):e3129. PubMed ID: 30021243
[TBL] [Abstract][Full Text] [Related]
19. KINARI-Web: a server for protein rigidity analysis.
Fox N; Jagodzinski F; Li Y; Streinu I
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W177-83. PubMed ID: 21693559
[TBL] [Abstract][Full Text] [Related]
20. PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics.
Azuara C; Lindahl E; Koehl P; Orland H; Delarue M
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W38-42. PubMed ID: 16845031
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]