330 related articles for article (PubMed ID: 24694831)
1. TCS: a new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree reconstruction.
Chang JM; Di Tommaso P; Notredame C
Mol Biol Evol; 2014 Jun; 31(6):1625-37. PubMed ID: 24694831
[TBL] [Abstract][Full Text] [Related]
2. TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction.
Chang JM; Di Tommaso P; Lefort V; Gascuel O; Notredame C
Nucleic Acids Res; 2015 Jul; 43(W1):W3-6. PubMed ID: 25855806
[TBL] [Abstract][Full Text] [Related]
3. M-Coffee: combining multiple sequence alignment methods with T-Coffee.
Wallace IM; O'Sullivan O; Higgins DG; Notredame C
Nucleic Acids Res; 2006; 34(6):1692-9. PubMed ID: 16556910
[TBL] [Abstract][Full Text] [Related]
4. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
[TBL] [Abstract][Full Text] [Related]
5. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.
Yamada S; Gotoh O; Yamana H
BMC Bioinformatics; 2006 Dec; 7():524. PubMed ID: 17137519
[TBL] [Abstract][Full Text] [Related]
6. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
Moretti S; Armougom F; Wallace IM; Higgins DG; Jongeneel CV; Notredame C
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W645-8. PubMed ID: 17526519
[TBL] [Abstract][Full Text] [Related]
7. The iRMSD: a local measure of sequence alignment accuracy using structural information.
Armougom F; Moretti S; Keduas V; Notredame C
Bioinformatics; 2006 Jul; 22(14):e35-9. PubMed ID: 16873492
[TBL] [Abstract][Full Text] [Related]
8. Ancestral sequence alignment under optimal conditions.
Hudek AK; Brown DG
BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
[TBL] [Abstract][Full Text] [Related]
9. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
10. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
11. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
12. An alignment confidence score capturing robustness to guide tree uncertainty.
Penn O; Privman E; Landan G; Graur D; Pupko T
Mol Biol Evol; 2010 Aug; 27(8):1759-67. PubMed ID: 20207713
[TBL] [Abstract][Full Text] [Related]
13. Segment-based multiple sequence alignment.
Rausch T; Emde AK; Weese D; Döring A; Notredame C; Reinert K
Bioinformatics; 2008 Aug; 24(16):i187-92. PubMed ID: 18689823
[TBL] [Abstract][Full Text] [Related]
14. APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
Armougom F; Poirot O; Moretti S; Higgins DG; Bucher P; Keduas V; Notredame C
Bioinformatics; 2006 Oct; 22(19):2439-40. PubMed ID: 17032685
[TBL] [Abstract][Full Text] [Related]
15. T-Coffee: Tree-based consistency objective function for alignment evaluation.
Magis C; Taly JF; Bussotti G; Chang JM; Di Tommaso P; Erb I; Espinosa-Carrasco J; Notredame C
Methods Mol Biol; 2014; 1079():117-29. PubMed ID: 24170398
[TBL] [Abstract][Full Text] [Related]
16. Improvement in the accuracy of multiple sequence alignment program MAFFT.
Katoh K; Kuma K; Miyata T; Toh H
Genome Inform; 2005; 16(1):22-33. PubMed ID: 16362903
[TBL] [Abstract][Full Text] [Related]
17. Multiple Sequence Alignment Averaging Improves Phylogeny Reconstruction.
Ashkenazy H; Sela I; Levy Karin E; Landan G; Pupko T
Syst Biol; 2019 Jan; 68(1):117-130. PubMed ID: 29771363
[TBL] [Abstract][Full Text] [Related]
18. Kalign--an accurate and fast multiple sequence alignment algorithm.
Lassmann T; Sonnhammer EL
BMC Bioinformatics; 2005 Dec; 6():298. PubMed ID: 16343337
[TBL] [Abstract][Full Text] [Related]
19. T-Coffee: A novel method for fast and accurate multiple sequence alignment.
Notredame C; Higgins DG; Heringa J
J Mol Biol; 2000 Sep; 302(1):205-17. PubMed ID: 10964570
[TBL] [Abstract][Full Text] [Related]
20. The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods.
Letsch HO; Kück P; Stocsits RR; Misof B
Mol Biol Evol; 2010 Nov; 27(11):2507-21. PubMed ID: 20530152
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
