133 related articles for article (PubMed ID: 24700812)
1. 3PFDB+: improved search protocol and update for the identification of representatives of protein sequence domain families.
Joseph AP; Shingate P; Upadhyay AK; Sowdhamini R
Database (Oxford); 2014; 2014():bau026. PubMed ID: 24700812
[TBL] [Abstract][Full Text] [Related]
2. 3PFDB--a database of best representative PSSM profiles (BRPs) of protein families generated using a novel data mining approach.
Shameer K; Nagarajan P; Gaurav K; Sowdhamini R
BioData Min; 2009 Dec; 2(1):8. PubMed ID: 19961575
[TBL] [Abstract][Full Text] [Related]
3. SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes.
Pandit SB; Gosar D; Abhiman S; Sujatha S; Dixit SS; Mhatre NS; Sowdhamini R; Srinivasan N
Nucleic Acids Res; 2002 Jan; 30(1):289-93. PubMed ID: 11752317
[TBL] [Abstract][Full Text] [Related]
4. PASS2: an automated database of protein alignments organised as structural superfamilies.
Bhaduri A; Pugalenthi G; Sowdhamini R
BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
[TBL] [Abstract][Full Text] [Related]
5. EVEREST: automatic identification and classification of protein domains in all protein sequences.
Portugaly E; Harel A; Linial N; Linial M
BMC Bioinformatics; 2006 Jun; 7():277. PubMed ID: 16749920
[TBL] [Abstract][Full Text] [Related]
6. SUPFAM: a database of sequence superfamilies of protein domains.
Pandit SB; Bhadra R; Gowri VS; Balaji S; Anand B; Srinivasan N
BMC Bioinformatics; 2004 Mar; 5():28. PubMed ID: 15113407
[TBL] [Abstract][Full Text] [Related]
7. HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition.
Bradshaw CR; Surendranath V; Henschel R; Mueller MS; Habermann BH
PLoS One; 2011 Mar; 6(3):e17568. PubMed ID: 21423752
[TBL] [Abstract][Full Text] [Related]
8. Pfam: a comprehensive database of protein domain families based on seed alignments.
Sonnhammer EL; Eddy SR; Durbin R
Proteins; 1997 Jul; 28(3):405-20. PubMed ID: 9223186
[TBL] [Abstract][Full Text] [Related]
9. Exhaustive enumeration of protein domain families.
Heger A; Holm L
J Mol Biol; 2003 May; 328(3):749-67. PubMed ID: 12706730
[TBL] [Abstract][Full Text] [Related]
10. Accurate domain identification with structure-anchored hidden Markov models, saHMMs.
Tångrot JE; Kågström B; Sauer UH
Proteins; 2009 Aug; 76(2):343-52. PubMed ID: 19173309
[TBL] [Abstract][Full Text] [Related]
11. SplitTester: software to identify domains responsible for functional divergence in protein family.
Gao X; Vander Velden KA; Voytas DF; Gu X
BMC Bioinformatics; 2005 Jun; 6():137. PubMed ID: 15929795
[TBL] [Abstract][Full Text] [Related]
12. Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation.
Russo ET; Laio A; Punta M
BMC Bioinformatics; 2021 Mar; 22(1):121. PubMed ID: 33711918
[TBL] [Abstract][Full Text] [Related]
13. GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies.
Iyer MS; Bhargava K; Pavalam M; Sowdhamini R
Database (Oxford); 2019 Jan; 2019():. PubMed ID: 30943284
[TBL] [Abstract][Full Text] [Related]
14. A sequence family database built on ECOD structural domains.
Liao Y; Schaeffer RD; Pei J; Grishin NV
Bioinformatics; 2018 Sep; 34(17):2997-3003. PubMed ID: 29659718
[TBL] [Abstract][Full Text] [Related]
15. Domain enhanced lookup time accelerated BLAST.
Boratyn GM; Schäffer AA; Agarwala R; Altschul SF; Lipman DJ; Madden TL
Biol Direct; 2012 Apr; 7():12. PubMed ID: 22510480
[TBL] [Abstract][Full Text] [Related]
16. RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information.
Ghosh P; Mathew OK; Sowdhamini R
BMC Bioinformatics; 2016 Oct; 17(1):411. PubMed ID: 27717309
[TBL] [Abstract][Full Text] [Related]
17. A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised.
Studholme DJ; Rawlings ND; Barrett AJ; Bateman A
BMC Bioinformatics; 2003 May; 4():17. PubMed ID: 12740029
[TBL] [Abstract][Full Text] [Related]
18. Improved detection of remote homologues using cascade PSI-BLAST: influence of neighbouring protein families on sequence coverage.
Kaushik S; Mutt E; Chellappan A; Sankaran S; Srinivasan N; Sowdhamini R
PLoS One; 2013; 8(2):e56449. PubMed ID: 23437136
[TBL] [Abstract][Full Text] [Related]
19. PconsFam: An Interactive Database of Structure Predictions of Pfam Families.
Lamb J; Jarmolinska AI; Michel M; Menéndez-Hurtado D; Sulkowska JI; Elofsson A
J Mol Biol; 2019 Jun; 431(13):2442-2448. PubMed ID: 30796988
[TBL] [Abstract][Full Text] [Related]
20. Artificial protein sequences enable recognition of vicinal and distant protein functional relationships.
Kumar G; Srinivasan N; Sandhya S
Proteins; 2020 Dec; 88(12):1688-1700. PubMed ID: 32725917
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]