These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 24728005)

  • 1. Amplicon-based metagenomic analysis of mixed fungal samples using proton release amplicon sequencing.
    Tonge DP; Pashley CH; Gant TW
    PLoS One; 2014; 9(4):e93849. PubMed ID: 24728005
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 3. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.
    Mysara M; Njima M; Leys N; Raes J; Monsieurs P
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369460
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota.
    Hamad I; Ranque S; Azhar EI; Yasir M; Jiman-Fatani AA; Tissot-Dupont H; Raoult D; Bittar F
    Sci Rep; 2017 Dec; 7(1):16788. PubMed ID: 29196717
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity.
    De Filippis F; Laiola M; Blaiotta G; Ercolini D
    Appl Environ Microbiol; 2017 Sep; 83(17):. PubMed ID: 28625991
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reconciliation between operational taxonomic units and species boundaries.
    Mysara M; Vandamme P; Props R; Kerckhof FM; Leys N; Boon N; Raes J; Monsieurs P
    FEMS Microbiol Ecol; 2017 Apr; 93(4):. PubMed ID: 28334218
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Inferring Species Compositions of Complex Fungal Communities from Long- and Short-Read Sequence Data.
    Hu Y; Irinyi L; Hoang MTV; Eenjes T; Graetz A; Stone EA; Meyer W; Schwessinger B; Rathjen JP
    mBio; 2022 Apr; 13(2):e0244421. PubMed ID: 35404122
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Reference databases for taxonomic assignment in metagenomics.
    Santamaria M; Fosso B; Consiglio A; De Caro G; Grillo G; Licciulli F; Liuni S; Marzano M; Alonso-Alemany D; Valiente G; Pesole G
    Brief Bioinform; 2012 Nov; 13(6):682-95. PubMed ID: 22786784
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Long- and short-read metabarcoding technologies reveal similar spatiotemporal structures in fungal communities.
    Furneaux B; Bahram M; Rosling A; Yorou NS; Ryberg M
    Mol Ecol Resour; 2021 Aug; 21(6):1833-1849. PubMed ID: 33811446
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Metataxonomic comparison between internal transcribed spacer and 26S ribosomal large subunit (LSU) rDNA gene.
    Mota-Gutierrez J; Ferrocino I; Rantsiou K; Cocolin L
    Int J Food Microbiol; 2019 Feb; 290():132-140. PubMed ID: 30340111
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluation of the ribosomal DNA internal transcribed spacer (ITS), specifically ITS1 and ITS2, for the analysis of fungal diversity by deep sequencing.
    Yang RH; Su JH; Shang JJ; Wu YY; Li Y; Bao DP; Yao YJ
    PLoS One; 2018; 13(10):e0206428. PubMed ID: 30359454
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error.
    Porter TM; Golding GB
    PLoS One; 2012; 7(4):e35749. PubMed ID: 22558215
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Phylogenetically Structured Differences in rRNA Gene Sequence Variation among Species of Arbuscular Mycorrhizal Fungi and Their Implications for Sequence Clustering.
    House GL; Ekanayake S; Ruan Y; Schütte UM; Kaonongbua W; Fox G; Ye Y; Bever JD
    Appl Environ Microbiol; 2016 Aug; 82(16):4921-30. PubMed ID: 27260357
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.
    Heeger F; Bourne EC; Baschien C; Yurkov A; Bunk B; Spröer C; Overmann J; Mazzoni CJ; Monaghan MT
    Mol Ecol Resour; 2018 Nov; 18(6):1500-1514. PubMed ID: 30106226
    [TBL] [Abstract][Full Text] [Related]  

  • 15. HumanMycobiomeScan: a new bioinformatics tool for the characterization of the fungal fraction in metagenomic samples.
    Soverini M; Turroni S; Biagi E; Brigidi P; Candela M; Rampelli S
    BMC Genomics; 2019 Jun; 20(1):496. PubMed ID: 31202277
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Customization of a DADA2-based pipeline for fungal internal transcribed spacer 1 (ITS1) amplicon data sets.
    Rolling T; Zhai B; Frame J; Hohl TM; Taur Y
    JCI Insight; 2022 Jan; 7(1):. PubMed ID: 34813499
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing.
    Monard C; Gantner S; Stenlid J
    FEMS Microbiol Ecol; 2013 Apr; 84(1):165-75. PubMed ID: 23176677
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Combined bacterial and fungal targeted amplicon sequencing of respiratory samples: Does the DNA extraction method matter?
    Angebault C; Payen M; Woerther PL; Rodriguez C; Botterel F
    PLoS One; 2020; 15(4):e0232215. PubMed ID: 32343737
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Deep learning models for bacteria taxonomic classification of metagenomic data.
    Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
    BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The gut mycobiome of the Human Microbiome Project healthy cohort.
    Nash AK; Auchtung TA; Wong MC; Smith DP; Gesell JR; Ross MC; Stewart CJ; Metcalf GA; Muzny DM; Gibbs RA; Ajami NJ; Petrosino JF
    Microbiome; 2017 Nov; 5(1):153. PubMed ID: 29178920
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.