147 related articles for article (PubMed ID: 24748652)
1. Bayesian estimation of nonsynonymous/synonymous rate ratios for pairwise sequence comparisons.
Angelis K; Dos Reis M; Yang Z
Mol Biol Evol; 2014 Jul; 31(7):1902-13. PubMed ID: 24748652
[TBL] [Abstract][Full Text] [Related]
2. Why do more divergent sequences produce smaller nonsynonymous/synonymous rate ratios in pairwise sequence comparisons?
Dos Reis M; Yang Z
Genetics; 2013 Sep; 195(1):195-204. PubMed ID: 23792953
[TBL] [Abstract][Full Text] [Related]
3. Bayes empirical bayes inference of amino acid sites under positive selection.
Yang Z; Wong WS; Nielsen R
Mol Biol Evol; 2005 Apr; 22(4):1107-18. PubMed ID: 15689528
[TBL] [Abstract][Full Text] [Related]
4. Synonymous and nonsynonymous rate variation in nuclear genes of mammals.
Yang Z; Nielsen R
J Mol Evol; 1998 Apr; 46(4):409-18. PubMed ID: 9541535
[TBL] [Abstract][Full Text] [Related]
5. Inference of mutation parameters and selective constraint in mammalian coding sequences by approximate Bayesian computation.
Keightley PD; Eöry L; Halligan DL; Kirkpatrick M
Genetics; 2011 Apr; 187(4):1153-61. PubMed ID: 21288873
[TBL] [Abstract][Full Text] [Related]
6. A Dirichlet process model for detecting positive selection in protein-coding DNA sequences.
Huelsenbeck JP; Jain S; Frost SW; Pond SL
Proc Natl Acad Sci U S A; 2006 Apr; 103(16):6263-8. PubMed ID: 16606848
[TBL] [Abstract][Full Text] [Related]
7. Detecting positively selected sites from amino Acid sequences: an implicit codon model.
Ouyang Z; Liang J
Annu Int Conf IEEE Eng Med Biol Soc; 2007; 2007():5302-6. PubMed ID: 18003204
[TBL] [Abstract][Full Text] [Related]
8. Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences.
Seo TK; Kishino H; Thorne JL
Mol Biol Evol; 2004 Jul; 21(7):1201-13. PubMed ID: 15014159
[TBL] [Abstract][Full Text] [Related]
9. Codon-substitution models for heterogeneous selection pressure at amino acid sites.
Yang Z; Nielsen R; Goldman N; Pedersen AM
Genetics; 2000 May; 155(1):431-49. PubMed ID: 10790415
[TBL] [Abstract][Full Text] [Related]
10. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
11. Identifying sites under positive selection with uncertain parameter estimates.
Aris-Brosou S
Genome; 2006 Jul; 49(7):767-76. PubMed ID: 16936785
[TBL] [Abstract][Full Text] [Related]
12. Bayesian estimation of positively selected sites.
Huelsenbeck JP; Dyer KA
J Mol Evol; 2004 Jun; 58(6):661-72. PubMed ID: 15461423
[TBL] [Abstract][Full Text] [Related]
13. A Bayesian model comparison approach to inferring positive selection.
Scheffler K; Seoighe C
Mol Biol Evol; 2005 Dec; 22(12):2531-40. PubMed ID: 16120799
[TBL] [Abstract][Full Text] [Related]
14. Accuracy and power of bayes prediction of amino acid sites under positive selection.
Anisimova M; Bielawski JP; Yang Z
Mol Biol Evol; 2002 Jun; 19(6):950-8. PubMed ID: 12032251
[TBL] [Abstract][Full Text] [Related]
15. A Bayesian evolutionary distance for parametrically aligned sequences.
Agarwal P; States DJ
J Comput Biol; 1996; 3(1):1-17. PubMed ID: 8697232
[TBL] [Abstract][Full Text] [Related]
16. Not so different after all: a comparison of methods for detecting amino acid sites under selection.
Kosakovsky Pond SL; Frost SD
Mol Biol Evol; 2005 May; 22(5):1208-22. PubMed ID: 15703242
[TBL] [Abstract][Full Text] [Related]
17. Estimates of the effect of natural selection on protein-coding content.
Yap VB; Lindsay H; Easteal S; Huttley G
Mol Biol Evol; 2010 Mar; 27(3):726-34. PubMed ID: 19815689
[TBL] [Abstract][Full Text] [Related]
18. Methods for incorporating the hypermutability of CpG dinucleotides in detecting natural selection operating at the amino acid sequence level.
Suzuki Y; Gojobori T; Kumar S
Mol Biol Evol; 2009 Oct; 26(10):2275-84. PubMed ID: 19581348
[TBL] [Abstract][Full Text] [Related]
19. Natural selection on synonymous and nonsynonymous mutations shapes patterns of polymorphism in Populus tremula.
Ingvarsson PK
Mol Biol Evol; 2010 Mar; 27(3):650-60. PubMed ID: 19837657
[TBL] [Abstract][Full Text] [Related]
20. The positive correlation between dN/dS and dS in mammals is due to runs of adjacent substitutions.
Stoletzki N; Eyre-Walker A
Mol Biol Evol; 2011 Apr; 28(4):1371-80. PubMed ID: 21115654
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]