These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

235 related articles for article (PubMed ID: 24762569)

  • 1. A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations.
    Frappier V; Najmanovich RJ
    PLoS Comput Biol; 2014 Apr; 10(4):e1003569. PubMed ID: 24762569
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Sequence-sensitive elastic network captures dynamical features necessary for miR-125a maturation.
    Mailhot O; Frappier V; Major F; Najmanovich RJ
    PLoS Comput Biol; 2022 Dec; 18(12):e1010777. PubMed ID: 36516216
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Applications of Normal Mode Analysis Methods in Computational Protein Design.
    Frappier V; Chartier M; Najmanovich R
    Methods Mol Biol; 2017; 1529():203-214. PubMed ID: 27914052
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability.
    Frappier V; Chartier M; Najmanovich RJ
    Nucleic Acids Res; 2015 Jul; 43(W1):W395-400. PubMed ID: 25883149
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multiscale design of coarse-grained elastic network-based potentials for the μ opioid receptor.
    Fossépré M; Leherte L; Laaksonen A; Vercauteren DP
    J Mol Model; 2016 Sep; 22(9):227. PubMed ID: 27566318
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Bridging between normal mode analysis and elastic network models.
    Na H; Song G
    Proteins; 2014 Sep; 82(9):2157-68. PubMed ID: 24692201
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bridging between NMA and Elastic Network Models: Preserving All-Atom Accuracy in Coarse-Grained Models.
    Na H; Jernigan RL; Song G
    PLoS Comput Biol; 2015 Oct; 11(10):e1004542. PubMed ID: 26473491
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Specific non-local interactions are not necessary for recovering native protein dynamics.
    Dasgupta B; Kasahara K; Kamiya N; Nakamura H; Kinjo AR
    PLoS One; 2014; 9(3):e91347. PubMed ID: 24625758
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Domain decomposition-based structural condensation of large protein structures for understanding their conformational dynamics.
    Kim JI; Na S; Eom K
    J Comput Chem; 2011 Jan; 32(1):161-9. PubMed ID: 20645300
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Conventional NMA as a better standard for evaluating elastic network models.
    Na H; Song G
    Proteins; 2015 Feb; 83(2):259-67. PubMed ID: 25471641
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The performance of fine-grained and coarse-grained elastic network models and its dependence on various factors.
    Na H; Song G
    Proteins; 2015 Jul; 83(7):1273-83. PubMed ID: 25917684
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Coarse-Grained Protein Dynamics Studies Using Elastic Network Models.
    Togashi Y; Flechsig H
    Int J Mol Sci; 2018 Dec; 19(12):. PubMed ID: 30563146
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion.
    Stember JN; Wriggers W
    J Chem Phys; 2009 Aug; 131(7):074112. PubMed ID: 19708737
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Defining coarse-grained representations of large biomolecules and biomolecular complexes from elastic network models.
    Zhang Z; Pfaendtner J; Grafmüller A; Voth GA
    Biophys J; 2009 Oct; 97(8):2327-37. PubMed ID: 19843465
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Normal mode analysis of proteins: a comparison of rigid cluster modes with C(alpha) coarse graining.
    Schuyler AD; Chirikjian GS
    J Mol Graph Model; 2004 Jan; 22(3):183-93. PubMed ID: 14629977
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Vibrational entropy differences between mesophile and thermophile proteins and their use in protein engineering.
    Frappier V; Najmanovich R
    Protein Sci; 2015 Apr; 24(4):474-83. PubMed ID: 25367089
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Generalized spring tensor models for protein fluctuation dynamics and conformation changes.
    Na H; Lin TL; Song G
    Adv Exp Med Biol; 2014; 805():107-35. PubMed ID: 24446359
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Approximate normal mode analysis based on vibrational subsystem analysis with high accuracy and efficiency.
    Hafner J; Zheng W
    J Chem Phys; 2009 May; 130(19):194111. PubMed ID: 19466825
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Free energies for coarse-grained proteins by integrating multibody statistical contact potentials with entropies from elastic network models.
    Zimmermann MT; Leelananda SP; Gniewek P; Feng Y; Jernigan RL; Kloczkowski A
    J Struct Funct Genomics; 2011 Jul; 12(2):137-47. PubMed ID: 21674234
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Efficient prediction of protein conformational pathways based on the hybrid elastic network model.
    Seo S; Jang Y; Qian P; Liu WK; Choi JB; Lim BS; Kim MK
    J Mol Graph Model; 2014 Feb; 47():25-36. PubMed ID: 24296313
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.