BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

191 related articles for article (PubMed ID: 24771339)

  • 1. RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.
    Antczak M; Zok T; Popenda M; Lukasiak P; Adamiak RW; Blazewicz J; Szachniuk M
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W368-72. PubMed ID: 24771339
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNApdbee 2.0: multifunctional tool for RNA structure annotation.
    Zok T; Antczak M; Zurkowski M; Popenda M; Blazewicz J; Adamiak RW; Szachniuk M
    Nucleic Acids Res; 2018 Jul; 46(W1):W30-W35. PubMed ID: 29718468
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs.
    Antczak M; Zablocki M; Zok T; Rybarczyk A; Blazewicz J; Szachniuk M
    Bioinformatics; 2019 Jan; 35(1):152-155. PubMed ID: 29985979
    [TBL] [Abstract][Full Text] [Related]  

  • 4. New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.
    Antczak M; Popenda M; Zok T; Zurkowski M; Adamiak RW; Szachniuk M
    Bioinformatics; 2018 Apr; 34(8):1304-1312. PubMed ID: 29236971
    [TBL] [Abstract][Full Text] [Related]  

  • 5. WebTetrado: a webserver to explore quadruplexes in nucleic acid 3D structures.
    Adamczyk B; Zurkowski M; Szachniuk M; Zok T
    Nucleic Acids Res; 2023 Jul; 51(W1):W607-W612. PubMed ID: 37158242
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures.
    Popenda M; Blazewicz M; Szachniuk M; Adamiak RW
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D386-91. PubMed ID: 17921499
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures.
    Antczak M; Zok T; Osowiecki M; Popenda M; Adamiak RW; Szachniuk M
    BMC Bioinformatics; 2018 Aug; 19(1):304. PubMed ID: 30134831
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.
    Popenda M; Szachniuk M; Blazewicz M; Wasik S; Burke EK; Blazewicz J; Adamiak RW
    BMC Bioinformatics; 2010 May; 11():231. PubMed ID: 20459631
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DSSR-enhanced visualization of nucleic acid structures in Jmol.
    Hanson RM; Lu XJ
    Nucleic Acids Res; 2017 Jul; 45(W1):W528-W533. PubMed ID: 28472503
    [TBL] [Abstract][Full Text] [Related]  

  • 10. New in silico approach to assessing RNA secondary structures with non-canonical base pairs.
    Rybarczyk A; Szostak N; Antczak M; Zok T; Popenda M; Adamiak R; Blazewicz J; Szachniuk M
    BMC Bioinformatics; 2015 Sep; 16(1):276. PubMed ID: 26329823
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNAspider: a webserver to analyze entanglements in RNA 3D structures.
    Luwanski K; Hlushchenko V; Popenda M; Zok T; Sarzynska J; Martsich D; Szachniuk M; Antczak M
    Nucleic Acids Res; 2022 Jul; 50(W1):W663-W669. PubMed ID: 35349710
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.
    Reinharz V; Major F; WaldispĆ¼hl J
    Bioinformatics; 2012 Jun; 28(12):i207-14. PubMed ID: 22689763
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Tools for the automatic identification and classification of RNA base pairs.
    Yang H; Jossinet F; Leontis N; Chen L; Westbrook J; Berman H; Westhof E
    Nucleic Acids Res; 2003 Jul; 31(13):3450-60. PubMed ID: 12824344
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DSSR: an integrated software tool for dissecting the spatial structure of RNA.
    Lu XJ; Bussemaker HJ; Olson WK
    Nucleic Acids Res; 2015 Dec; 43(21):e142. PubMed ID: 26184874
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Automated 3D RNA structure prediction using the RNAComposer method for riboswitches.
    Purzycka KJ; Popenda M; Szachniuk M; Antczak M; Lukasiak P; Blazewicz J; Adamiak RW
    Methods Enzymol; 2015; 553():3-34. PubMed ID: 25726459
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Automated RNA 3D Structure Prediction with RNAComposer.
    Biesiada M; Purzycka KJ; Szachniuk M; Blazewicz J; Adamiak RW
    Methods Mol Biol; 2016; 1490():199-215. PubMed ID: 27665601
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams.
    Kerpedjiev P; Hammer S; Hofacker IL
    Bioinformatics; 2015 Oct; 31(20):3377-9. PubMed ID: 26099263
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNAsolo: a repository of cleaned PDB-derived RNA 3D structures.
    Adamczyk B; Antczak M; Szachniuk M
    Bioinformatics; 2022 Jul; 38(14):3668-3670. PubMed ID: 35674373
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNAmap2D - calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures.
    Pietal MJ; Szostak N; Rother KM; Bujnicki JM
    BMC Bioinformatics; 2012 Dec; 13():333. PubMed ID: 23259794
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.