145 related articles for article (PubMed ID: 24792045)
1. Quantitative transcriptome analysis using RNA-seq.
Külahoglu C; Bräutigam A
Methods Mol Biol; 2014; 1158():71-91. PubMed ID: 24792045
[TBL] [Abstract][Full Text] [Related]
2. Seq-ing improved gene expression estimates from microarrays using machine learning.
Korir PK; Geeleher P; Seoighe C
BMC Bioinformatics; 2015 Sep; 16():286. PubMed ID: 26338512
[TBL] [Abstract][Full Text] [Related]
3. Comparative Methods for Demystifying Spatial Transcriptomics.
Sammeth M; Mudra S; Bialdiga S; Hartmannsberger B; Kramer S; Rittner H
Methods Mol Biol; 2024; 2802():515-546. PubMed ID: 38819570
[TBL] [Abstract][Full Text] [Related]
4. A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways.
Garrido-Rodriguez M; Lopez-Lopez D; Ortuno FM; Peña-Chilet M; Muñoz E; Calzado MA; Dopazo J
PLoS Comput Biol; 2021 Feb; 17(2):e1008748. PubMed ID: 33571195
[TBL] [Abstract][Full Text] [Related]
5. Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq.
Policastro RA; Raborn RT; Brendel VP; Zentner GE
Genome Res; 2020 Jun; 30(6):910-923. PubMed ID: 32660958
[TBL] [Abstract][Full Text] [Related]
6. Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes.
Depledge DP; Mohr I; Wilson AC
J Virol; 2019 Jan; 93(1):. PubMed ID: 30305358
[TBL] [Abstract][Full Text] [Related]
7. Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples.
Curion F; Handel AE; Attar M; Gallone G; Bowden R; Cader MZ; Clark MB
RNA Biol; 2020 Dec; 17(12):1741-1753. PubMed ID: 32597303
[TBL] [Abstract][Full Text] [Related]
8. Quantification of differential gene expression by multiplexed targeted resequencing of cDNA.
Arts P; van der Raadt J; van Gestel SHC; Steehouwer M; Shendure J; Hoischen A; Albers CA
Nat Commun; 2017 May; 8():15190. PubMed ID: 28474677
[TBL] [Abstract][Full Text] [Related]
9. Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data.
Blumenkamp P; Pfister M; Diedrich S; Brinkrolf K; Jaenicke S; Goesmann A
BMC Bioinformatics; 2024 Mar; 25(1):138. PubMed ID: 38553675
[TBL] [Abstract][Full Text] [Related]
10. Differential expression analysis for sequence count data.
Anders S; Huber W
Genome Biol; 2010; 11(10):R106. PubMed ID: 20979621
[TBL] [Abstract][Full Text] [Related]
11. Cross-platform transcriptomic profiling of the response to recombinant human erythropoietin.
Wang G; Kitaoka T; Crawford A; Mao Q; Hesketh A; Guppy FM; Ash GI; Liu J; Gerstein MB; Pitsiladis YP
Sci Rep; 2021 Nov; 11(1):21705. PubMed ID: 34737331
[TBL] [Abstract][Full Text] [Related]
12. Cryptococcus neoformans Transcriptome Analysis to Identify Differentially Expressed Genes Using the STAR Pipeline in CyVerse Discovery Environment.
Seipelt-Thiemann RL
Methods Mol Biol; 2024; 2775():109-126. PubMed ID: 38758314
[TBL] [Abstract][Full Text] [Related]
13. Brief guide to RNA sequencing analysis for nonexperts in bioinformatics.
Lee GY; Ham S; Lee SV
Mol Cells; 2024 May; 47(5):100060. PubMed ID: 38614390
[TBL] [Abstract][Full Text] [Related]
14. Comprehensive evaluation of RNA-seq quantification methods for linearity.
Jin H; Wan YW; Liu Z
BMC Bioinformatics; 2017 Mar; 18(Suppl 4):117. PubMed ID: 28361706
[TBL] [Abstract][Full Text] [Related]
15. Standardization and Interpretation of RNA-sequencing for Transplantation.
Thareja G; Suryawanshi H; Luo X; Muthukumar T
Transplantation; 2023 Oct; 107(10):2155-2167. PubMed ID: 37026702
[TBL] [Abstract][Full Text] [Related]
16. The hitchhikers' guide to RNA sequencing and functional analysis.
Chen JW; Shrestha L; Green G; Leier A; Marquez-Lago TT
Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36617463
[TBL] [Abstract][Full Text] [Related]
17. The Impact of Normalization Methods on RNA-Seq Data Analysis.
Zyprych-Walczak J; Szabelska A; Handschuh L; Górczak K; Klamecka K; Figlerowicz M; Siatkowski I
Biomed Res Int; 2015; 2015():621690. PubMed ID: 26176014
[TBL] [Abstract][Full Text] [Related]
18. Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA.
Yang L; Wang J; Altreuter J; Jhaveri A; Wong CJ; Song L; Fu J; Taing L; Bodapati S; Sahu A; Tokheim C; Zhang Y; Zeng Z; Bai G; Tang M; Qiu X; Long HW; Michor F; Liu Y; Liu XS
Nat Protoc; 2023 Aug; 18(8):2404-2414. PubMed ID: 37391666
[TBL] [Abstract][Full Text] [Related]
19. Advancing brain barriers RNA sequencing: guidelines from experimental design to publication.
Francisco DMF; Marchetti L; Rodríguez-Lorenzo S; Frías-Anaya E; Figueiredo RM; ; Winter P; Romero IA; de Vries HE; Engelhardt B; Bruggmann R
Fluids Barriers CNS; 2020 Aug; 17(1):51. PubMed ID: 32811511
[TBL] [Abstract][Full Text] [Related]
20. TimeLapse-seq: adding a temporal dimension to RNA sequencing through nucleoside recoding.
Schofield JA; Duffy EE; Kiefer L; Sullivan MC; Simon MD
Nat Methods; 2018 Mar; 15(3):221-225. PubMed ID: 29355846
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
