390 related articles for article (PubMed ID: 24802639)
1. Automated genome mining of ribosomal peptide natural products.
Mohimani H; Kersten RD; Liu WT; Wang M; Purvine SO; Wu S; Brewer HM; Pasa-Tolic L; Bandeira N; Moore BS; Pevzner PA; Dorrestein PC
ACS Chem Biol; 2014 Jul; 9(7):1545-51. PubMed ID: 24802639
[TBL] [Abstract][Full Text] [Related]
2. Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides.
Kloosterman AM; Cimermancic P; Elsayed SS; Du C; Hadjithomas M; Donia MS; Fischbach MA; van Wezel GP; Medema MH
PLoS Biol; 2020 Dec; 18(12):e3001026. PubMed ID: 33351797
[TBL] [Abstract][Full Text] [Related]
3. DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products.
Merwin NJ; Mousa WK; Dejong CA; Skinnider MA; Cannon MJ; Li H; Dial K; Gunabalasingam M; Johnston C; Magarvey NA
Proc Natl Acad Sci U S A; 2020 Jan; 117(1):371-380. PubMed ID: 31871149
[TBL] [Abstract][Full Text] [Related]
4. Ribosomally synthesized and post-translationally modified peptide natural product discovery in the genomic era.
Hetrick KJ; van der Donk WA
Curr Opin Chem Biol; 2017 Jun; 38():36-44. PubMed ID: 28260651
[TBL] [Abstract][Full Text] [Related]
5. Uncovering the unexplored diversity of thioamidated ribosomal peptides in Actinobacteria using the RiPPER genome mining tool.
Santos-Aberturas J; Chandra G; Frattaruolo L; Lacret R; Pham TH; Vior NM; Eyles TH; Truman AW
Nucleic Acids Res; 2019 May; 47(9):4624-4637. PubMed ID: 30916321
[TBL] [Abstract][Full Text] [Related]
6. Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining.
Skinnider MA; Johnston CW; Edgar RE; Dejong CA; Merwin NJ; Rees PN; Magarvey NA
Proc Natl Acad Sci U S A; 2016 Oct; 113(42):E6343-E6351. PubMed ID: 27698135
[TBL] [Abstract][Full Text] [Related]
7. Salinipeptins: Integrated Genomic and Chemical Approaches Reveal Unusual d-Amino Acid-Containing Ribosomally Synthesized and Post-Translationally Modified Peptides (RiPPs) from a Great Salt Lake Streptomyces sp.
Shang Z; Winter JM; Kauffman CA; Yang I; Fenical W
ACS Chem Biol; 2019 Mar; 14(3):415-425. PubMed ID: 30753052
[TBL] [Abstract][Full Text] [Related]
8. Structural investigation of ribosomally synthesized natural products by hypothetical structure enumeration and evaluation using tandem MS.
Zhang Q; Ortega M; Shi Y; Wang H; Melby JO; Tang W; Mitchell DA; van der Donk WA
Proc Natl Acad Sci U S A; 2014 Aug; 111(33):12031-6. PubMed ID: 25092299
[TBL] [Abstract][Full Text] [Related]
9. MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.
Cao L; Gurevich A; Alexander KL; Naman CB; Leão T; Glukhov E; Luzzatto-Knaan T; Vargas F; Quinn R; Bouslimani A; Nothias LF; Singh NK; Sanders JG; Benitez RAS; Thompson LR; Hamid MN; Morton JT; Mikheenko A; Shlemov A; Korobeynikov A; Friedberg I; Knight R; Venkateswaran K; Gerwick WH; Gerwick L; Dorrestein PC; Pevzner PA; Mohimani H
Cell Syst; 2019 Dec; 9(6):600-608.e4. PubMed ID: 31629686
[TBL] [Abstract][Full Text] [Related]
10. A mass spectrometry-guided genome mining approach for natural product peptidogenomics.
Kersten RD; Yang YL; Xu Y; Cimermancic P; Nam SJ; Fenical W; Fischbach MA; Moore BS; Dorrestein PC
Nat Chem Biol; 2011 Oct; 7(11):794-802. PubMed ID: 21983601
[TBL] [Abstract][Full Text] [Related]
11. The genomic landscape of ribosomal peptides containing thiazole and oxazole heterocycles.
Cox CL; Doroghazi JR; Mitchell DA
BMC Genomics; 2015 Oct; 16():778. PubMed ID: 26462797
[TBL] [Abstract][Full Text] [Related]
12. A User Guide for the Identification of New RiPP Biosynthetic Gene Clusters Using a RiPPER-Based Workflow.
Moffat AD; Santos-Aberturas J; Chandra G; Truman AW
Methods Mol Biol; 2021; 2296():227-247. PubMed ID: 33977452
[TBL] [Abstract][Full Text] [Related]
13. New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products.
Ortega MA; van der Donk WA
Cell Chem Biol; 2016 Jan; 23(1):31-44. PubMed ID: 26933734
[TBL] [Abstract][Full Text] [Related]
14. Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products.
Medema MH; Paalvast Y; Nguyen DD; Melnik A; Dorrestein PC; Takano E; Breitling R
PLoS Comput Biol; 2014 Sep; 10(9):e1003822. PubMed ID: 25188327
[TBL] [Abstract][Full Text] [Related]
15. Metabolome-guided genome mining of RiPP natural products.
Zdouc MM; van der Hooft JJJ; Medema MH
Trends Pharmacol Sci; 2023 Aug; 44(8):532-541. PubMed ID: 37391295
[TBL] [Abstract][Full Text] [Related]
16. HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search.
Lee YY; Guler M; Chigumba DN; Wang S; Mittal N; Miller C; Krummenacher B; Liu H; Cao L; Kannan A; Narayan K; Slocum ST; Roth BL; Gurevich A; Behsaz B; Kersten RD; Mohimani H
Nat Commun; 2023 Jul; 14(1):4219. PubMed ID: 37452020
[TBL] [Abstract][Full Text] [Related]
17. Genome mining for ribosomally synthesised and post-translationally modified peptides (RiPPs) reveals undiscovered bioactive potentials of actinobacteria.
Poorinmohammad N; Bagheban-Shemirani R; Hamedi J
Antonie Van Leeuwenhoek; 2019 Oct; 112(10):1477-1499. PubMed ID: 31123844
[TBL] [Abstract][Full Text] [Related]
18. Precursor peptide-targeted mining of more than one hundred thousand genomes expands the lanthipeptide natural product family.
Walker MC; Eslami SM; Hetrick KJ; Ackenhusen SE; Mitchell DA; van der Donk WA
BMC Genomics; 2020 Jun; 21(1):387. PubMed ID: 32493223
[TBL] [Abstract][Full Text] [Related]
19. Discovery of novel fungal RiPP biosynthetic pathways and their application for the development of peptide therapeutics.
Vogt E; Künzler M
Appl Microbiol Biotechnol; 2019 Jul; 103(14):5567-5581. PubMed ID: 31147756
[TBL] [Abstract][Full Text] [Related]
20. Genome-guided investigation of secondary metabolites produced by a potential new strain Streptomyces BA2 isolated from an endemic plant rhizosphere in Turkey.
Kum E; İnce E
Arch Microbiol; 2021 Jul; 203(5):2431-2438. PubMed ID: 33666690
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
