93 related articles for article (PubMed ID: 24813541)
1. Exploring protein domain organization by recognition of secondary structure packing interfaces.
Deng L; Wu A; Dai W; Song T; Cui Y; Jiang T
Bioinformatics; 2014 Sep; 30(17):2440-6. PubMed ID: 24813541
[TBL] [Abstract][Full Text] [Related]
2. How a spatial arrangement of secondary structure elements is dispersed in the universe of protein folds.
Minami S; Sawada K; Chikenji G
PLoS One; 2014; 9(9):e107959. PubMed ID: 25243952
[TBL] [Abstract][Full Text] [Related]
3. ISSEC: inferring contacts among protein secondary structure elements using deep object detection.
Zhang Q; Zhu J; Ju F; Kong L; Sun S; Zheng WM; Bu D
BMC Bioinformatics; 2020 Nov; 21(1):503. PubMed ID: 33153432
[TBL] [Abstract][Full Text] [Related]
4. Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins.
Adamian L; Liang J
J Mol Biol; 2001 Aug; 311(4):891-907. PubMed ID: 11518538
[TBL] [Abstract][Full Text] [Related]
5. Automated Family-Wide Annotation of Secondary Structure Elements.
Midlik A; Hutařová Vařeková I; Hutař J; Moturu TR; Navrátilová V; Koča J; Berka K; Svobodová Vařeková R
Methods Mol Biol; 2019; 1958():47-71. PubMed ID: 30945213
[TBL] [Abstract][Full Text] [Related]
6. Interaction interfaces of protein domains are not topologically equivalent across families within superfamilies: Implications for metabolic and signaling pathways.
Rekha N; Machado SM; Narayanan C; Krupa A; Srinivasan N
Proteins; 2005 Feb; 58(2):339-53. PubMed ID: 15562516
[TBL] [Abstract][Full Text] [Related]
7. TetraBASE: A Side Chain-Independent Statistical Energy for Designing Realistically Packed Protein Backbones.
Chu H; Liu H
J Chem Inf Model; 2018 Feb; 58(2):430-442. PubMed ID: 29314837
[TBL] [Abstract][Full Text] [Related]
8. Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein-protein interactions.
Guharoy M; Chakrabarti P
Bioinformatics; 2007 Aug; 23(15):1909-18. PubMed ID: 17510165
[TBL] [Abstract][Full Text] [Related]
9. Protein-protein interfaces: architectures and interactions in protein-protein interfaces and in protein cores. Their similarities and differences.
Tsai CJ; Lin SL; Wolfson HJ; Nussinov R
Crit Rev Biochem Mol Biol; 1996 Apr; 31(2):127-52. PubMed ID: 8740525
[TBL] [Abstract][Full Text] [Related]
10. Characterizing the existing and potential structural space of proteins by large-scale multiple loop permutations.
Dai L; Zhou Y
J Mol Biol; 2011 May; 408(3):585-95. PubMed ID: 21376059
[TBL] [Abstract][Full Text] [Related]
11. Folding of tandem-linked domains.
Raman EP; Barsegov V; Klimov DK
Proteins; 2007 Jun; 67(4):795-810. PubMed ID: 17380511
[TBL] [Abstract][Full Text] [Related]
12. Unattained geometric configurations of secondary structure elements in protein structural space.
Sykes J; Holland B; Charleston M
J Struct Biol; 2022 Sep; 214(3):107870. PubMed ID: 35649487
[TBL] [Abstract][Full Text] [Related]
13. KScons: a Bayesian approach for protein residue contact prediction using the knob-socket model of protein tertiary structure.
Li Q; Dahl DB; Vannucci M; Joo H; Tsai JW
Bioinformatics; 2016 Dec; 32(24):3774-3781. PubMed ID: 27559156
[TBL] [Abstract][Full Text] [Related]
14. Conservation of inter-residue interactions and prediction of folding rates of domain repeats.
Mary RD; Saravanan MK; Selvaraj S
J Biomol Struct Dyn; 2015; 33(3):534-51. PubMed ID: 24702623
[TBL] [Abstract][Full Text] [Related]
15. An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins.
Sowdhamini R; Blundell TL
Protein Sci; 1995 Mar; 4(3):506-20. PubMed ID: 7795532
[TBL] [Abstract][Full Text] [Related]
16. In the multi-domain protein adenylate kinase, domain insertion facilitates cooperative folding while accommodating function at domain interfaces.
Giri Rao VV; Gosavi S
PLoS Comput Biol; 2014 Nov; 10(11):e1003938. PubMed ID: 25393408
[TBL] [Abstract][Full Text] [Related]
17. Symmetric connectivity of secondary structure elements enhances the diversity of folding pathways.
Klimov DK; Thirumalai D
J Mol Biol; 2005 Nov; 353(5):1171-86. PubMed ID: 16219323
[TBL] [Abstract][Full Text] [Related]
18. Domain closure in lactoferrin. Two hinges produce a see-saw motion between alternative close-packed interfaces.
Gerstein M; Anderson BF; Norris GE; Baker EN; Lesk AM; Chothia C
J Mol Biol; 1993 Nov; 234(2):357-72. PubMed ID: 8230220
[TBL] [Abstract][Full Text] [Related]
19. Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).
Beaussart F; Weiner J; Bornberg-Bauer E
Bioinformatics; 2007 Jul; 23(14):1834-6. PubMed ID: 17483506
[TBL] [Abstract][Full Text] [Related]
20. Unraveling the structural landscape of intra-chain domain interfaces: Implication in the evolution of domain-domain interactions.
Verma R; Pandit SB
PLoS One; 2019; 14(8):e0220336. PubMed ID: 31374091
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
