BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 24833805)

  • 1. RNASeqExpressionBrowser--a web interface to browse and visualize high-throughput expression data.
    Nussbaumer T; Kugler KG; Bader KC; Sharma S; Seidel M; Mayer KF
    Bioinformatics; 2014 Sep; 30(17):2519-20. PubMed ID: 24833805
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNA-Seq Atlas--a reference database for gene expression profiling in normal tissue by next-generation sequencing.
    Krupp M; Marquardt JU; Sahin U; Galle PR; Castle J; Teufel A
    Bioinformatics; 2012 Apr; 28(8):1184-5. PubMed ID: 22345621
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.
    D'Antonio M; D'Onorio De Meo P; Pallocca M; Picardi E; D'Erchia AM; Calogero RA; Castrignanò T; Pesole G
    BMC Genomics; 2015; 16(Suppl 6):S3. PubMed ID: 26046471
    [TBL] [Abstract][Full Text] [Related]  

  • 4. s ·nr: a visual analytics framework for contextual analyses of private and public RNA-seq data.
    Klemm P; Frommolt P; Kornfeld JW
    BMC Genomics; 2019 Jan; 20(1):85. PubMed ID: 30678634
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Analysis of RNA-Seq Data Using TopHat and Cufflinks.
    Ghosh S; Chan CK
    Methods Mol Biol; 2016; 1374():339-61. PubMed ID: 26519415
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
    Velmeshev D; Lally P; Magistri M; Faghihi MA
    BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
    [TBL] [Abstract][Full Text] [Related]  

  • 7. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
    Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
    Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data.
    Friedman BA; Maniatis T
    Genome Biol; 2011 Jul; 12(7):R69. PubMed ID: 21797991
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
    Havgaard JH; Lyngsø RB; Gorodkin J
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
    [TBL] [Abstract][Full Text] [Related]  

  • 10. QuickRNASeq: Guide for Pipeline Implementation and for Interactive Results Visualization.
    He W; Zhao S; Zhang C; Vincent MS; Zhang B
    Methods Mol Biol; 2018; 1751():57-70. PubMed ID: 29508289
    [TBL] [Abstract][Full Text] [Related]  

  • 11. NASQAR: a web-based platform for high-throughput sequencing data analysis and visualization.
    Yousif A; Drou N; Rowe J; Khalfan M; Gunsalus KC
    BMC Bioinformatics; 2020 Jun; 21(1):267. PubMed ID: 32600310
    [TBL] [Abstract][Full Text] [Related]  

  • 12. READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data.
    Förstner KU; Vogel J; Sharma CM
    Bioinformatics; 2014 Dec; 30(23):3421-3. PubMed ID: 25123900
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Polyester: simulating RNA-seq datasets with differential transcript expression.
    Frazee AC; Jaffe AE; Langmead B; Leek JT
    Bioinformatics; 2015 Sep; 31(17):2778-84. PubMed ID: 25926345
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GENAVi: a shiny web application for gene expression normalization, analysis and visualization.
    Reyes ALP; Silva TC; Coetzee SG; Plummer JT; Davis BD; Chen S; Hazelett DJ; Lawrenson K; Berman BP; Gayther SA; Jones MR
    BMC Genomics; 2019 Oct; 20(1):745. PubMed ID: 31619158
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Quantitative transcriptome analysis using RNA-seq.
    Külahoglu C; Bräutigam A
    Methods Mol Biol; 2014; 1158():71-91. PubMed ID: 24792045
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The START App: a web-based RNAseq analysis and visualization resource.
    Nelson JW; Sklenar J; Barnes AP; Minnier J
    Bioinformatics; 2017 Feb; 33(3):447-449. PubMed ID: 28171615
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq data.
    Gong T; Szustakowski JD
    Bioinformatics; 2013 Apr; 29(8):1083-5. PubMed ID: 23428642
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Quantitative visualization of alternative exon expression from RNA-seq data.
    Katz Y; Wang ET; Silterra J; Schwartz S; Wong B; Thorvaldsdóttir H; Robinson JT; Mesirov JP; Airoldi EM; Burge CB
    Bioinformatics; 2015 Jul; 31(14):2400-2. PubMed ID: 25617416
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment.
    Zhang Z; Huang S; Wang J; Zhang X; Pardo Manuel de Villena F; McMillan L; Wang W
    Bioinformatics; 2013 Jul; 29(13):i291-9. PubMed ID: 23812996
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Normalization and noise reduction for single cell RNA-seq experiments.
    Ding B; Zheng L; Zhu Y; Li N; Jia H; Ai R; Wildberg A; Wang W
    Bioinformatics; 2015 Jul; 31(13):2225-7. PubMed ID: 25717193
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.