141 related articles for article (PubMed ID: 24835279)
1. Statistical models for detecting differential chromatin interactions mediated by a protein.
Niu L; Li G; Lin S
PLoS One; 2014; 9(5):e97560. PubMed ID: 24835279
[TBL] [Abstract][Full Text] [Related]
2. A Bayesian mixture model for chromatin interaction data.
Niu L; Lin S
Stat Appl Genet Mol Biol; 2015 Feb; 14(1):53-64. PubMed ID: 25485614
[TBL] [Abstract][Full Text] [Related]
3. ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing.
Li G; Fullwood MJ; Xu H; Mulawadi FH; Velkov S; Vega V; Ariyaratne PN; Mohamed YB; Ooi HS; Tennakoon C; Wei CL; Ruan Y; Sung WK
Genome Biol; 2010; 11(2):R22. PubMed ID: 20181287
[TBL] [Abstract][Full Text] [Related]
4. MICC: an R package for identifying chromatin interactions from ChIA-PET data.
He C; Zhang MQ; Wang X
Bioinformatics; 2015 Dec; 31(23):3832-4. PubMed ID: 26231426
[TBL] [Abstract][Full Text] [Related]
5. ChIAPoP: a new tool for ChIA-PET data analysis.
Huang W; Medvedovic M; Zhang J; Niu L
Nucleic Acids Res; 2019 Apr; 47(7):e37. PubMed ID: 30753588
[TBL] [Abstract][Full Text] [Related]
6. ChIAMM: A Mixture Model for Statistical Analysis of Long-Range Chromatin Interactions From ChIA-PET Experiments.
Arega Y; Jiang H; Wang S; Zhang J; Niu X; Li G
Front Genet; 2020; 11():616160. PubMed ID: 33381154
[TBL] [Abstract][Full Text] [Related]
7. Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions.
Li X; Luo OJ; Wang P; Zheng M; Wang D; Piecuch E; Zhu JJ; Tian SZ; Tang Z; Li G; Ruan Y
Nat Protoc; 2017 May; 12(5):899-915. PubMed ID: 28358394
[TBL] [Abstract][Full Text] [Related]
8. DeepChIA-PET: Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks.
Liu T; Wang Z
PLoS Comput Biol; 2023 Jul; 19(7):e1011307. PubMed ID: 37440599
[TBL] [Abstract][Full Text] [Related]
9. Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3).
Li G; Sun T; Chang H; Cai L; Hong P; Zhou Q
Genes (Basel); 2019 Jul; 10(7):. PubMed ID: 31336684
[TBL] [Abstract][Full Text] [Related]
10. Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
Buisine N; Ruan X; Ruan Y; Sachs LM
Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895563
[TBL] [Abstract][Full Text] [Related]
11. Mango: a bias-correcting ChIA-PET analysis pipeline.
Phanstiel DH; Boyle AP; Heidari N; Snyder MP
Bioinformatics; 2015 Oct; 31(19):3092-8. PubMed ID: 26034063
[TBL] [Abstract][Full Text] [Related]
12. Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
Buisine N; Ruan X; Ruan Y; Sachs LM
Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895565
[TBL] [Abstract][Full Text] [Related]
13. Chromatin interaction analysis using paired-end tag sequencing.
Fullwood MJ; Han Y; Wei CL; Ruan X; Ruan Y
Curr Protoc Mol Biol; 2010 Jan; Chapter 21():Unit 21.15.1-25. PubMed ID: 20069536
[TBL] [Abstract][Full Text] [Related]
14. Deciphering Noncoding RNA and Chromatin Interactions: Multiplex Chromatin Interaction Analysis by Paired-End Tag Sequencing (mChIA-PET).
Choy J; Fullwood MJ
Methods Mol Biol; 2017; 1468():63-89. PubMed ID: 27662871
[TBL] [Abstract][Full Text] [Related]
15. In situ Chromatin Interaction Analysis Using Paired-End Tag Sequencing.
Wang P; Feng Y; Zhu K; Chai H; Chang YT; Yang X; Liu X; Shen C; Gega E; Lee B; Kim M; Ruan X; Ruan Y
Curr Protoc; 2021 Aug; 1(8):e174. PubMed ID: 34351700
[TBL] [Abstract][Full Text] [Related]
16. Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application.
Li G; Cai L; Chang H; Hong P; Zhou Q; Kulakova EV; Kolchanov NA; Ruan Y
BMC Genomics; 2014; 15 Suppl 12(Suppl 12):S11. PubMed ID: 25563301
[TBL] [Abstract][Full Text] [Related]
17. Impact of data resolution on three-dimensional structure inference methods.
Park J; Lin S
BMC Bioinformatics; 2016 Feb; 17():70. PubMed ID: 26852142
[TBL] [Abstract][Full Text] [Related]
18. Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for mapping chromatin interactions and understanding transcription regulation.
Goh Y; Fullwood MJ; Poh HM; Peh SQ; Ong CT; Zhang J; Ruan X; Ruan Y
J Vis Exp; 2012 Apr; (62):. PubMed ID: 22564980
[TBL] [Abstract][Full Text] [Related]
19. High resolution discovery of chromatin interactions.
Guo Y; Krismer K; Closser M; Wichterle H; Gifford DK
Nucleic Acids Res; 2019 Apr; 47(6):e35. PubMed ID: 30953075
[TBL] [Abstract][Full Text] [Related]
20. ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.
Li G; Chen Y; Snyder MP; Zhang MQ
Nucleic Acids Res; 2017 Jan; 45(1):e4. PubMed ID: 27625391
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
