These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

265 related articles for article (PubMed ID: 24845653)

  • 1. Exploration and retrieval of whole-metagenome sequencing samples.
    Seth S; Välimäki N; Kaski S; Honkela A
    Bioinformatics; 2014 Sep; 30(17):2471-9. PubMed ID: 24845653
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Estimating the total genome length of a metagenomic sample using k-mers.
    Hua K; Zhang X
    BMC Genomics; 2019 Apr; 20(Suppl 2):183. PubMed ID: 30967110
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
    Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
    Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A Content-Based Retrieval Framework for Whole Metagenome Sequencing Samples.
    Şener DD; Santoni D; Felici G; Oğul H
    J Integr Bioinform; 2018 Oct; 15(4):. PubMed ID: 30367805
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets.
    Rodriguez-R LM; Konstantinidis KT
    Bioinformatics; 2014 Mar; 30(5):629-35. PubMed ID: 24123672
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
    Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
    BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MetaGen: reference-free learning with multiple metagenomic samples.
    Xing X; Liu JS; Zhong W
    Genome Biol; 2017 Oct; 18(1):187. PubMed ID: 28974263
    [TBL] [Abstract][Full Text] [Related]  

  • 8. OGRE: Overlap Graph-based metagenomic Read clustEring.
    Balvert M; Luo X; Hauptfeld E; Schönhuth A; Dutilh BE
    Bioinformatics; 2021 May; 37(7):905-912. PubMed ID: 32871010
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data.
    Fosso B; Santamaria M; D'Antonio M; Lovero D; Corrado G; Vizza E; Passaro N; Garbuglia AR; Capobianchi MR; Crescenzi M; Valiente G; Pesole G
    Bioinformatics; 2017 Jun; 33(11):1730-1732. PubMed ID: 28130230
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples.
    Korem T; Zeevi D; Suez J; Weinberger A; Avnit-Sagi T; Pompan-Lotan M; Matot E; Jona G; Harmelin A; Cohen N; Sirota-Madi A; Thaiss CA; Pevsner-Fischer M; Sorek R; Xavier R; Elinav E; Segal E
    Science; 2015 Sep; 349(6252):1101-1106. PubMed ID: 26229116
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
    Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
    OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Analyzing large scale genomic data on the cloud with Sparkhit.
    Huang L; Krüger J; Sczyrba A
    Bioinformatics; 2018 May; 34(9):1457-1465. PubMed ID: 29253074
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Filtration and Normalization of Sequencing Read Data in Whole-Metagenome Shotgun Samples.
    Chouvarine P; Wiehlmann L; Moran Losada P; DeLuca DS; Tümmler B
    PLoS One; 2016; 11(10):e0165015. PubMed ID: 27760173
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists.
    Jo J; Oh J; Park C
    J Microbiol; 2020 Mar; 58(3):176-192. PubMed ID: 32108314
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PALADIN: protein alignment for functional profiling whole metagenome shotgun data.
    Westbrook A; Ramsdell J; Schuelke T; Normington L; Bergeron RD; Thomas WK; MacManes MD
    Bioinformatics; 2017 May; 33(10):1473-1478. PubMed ID: 28158639
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
    Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
    Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
    Staley C; Sadowsky MJ
    J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PanFP: pangenome-based functional profiles for microbial communities.
    Jun SR; Robeson MS; Hauser LJ; Schadt CW; Gorin AA
    BMC Res Notes; 2015 Sep; 8():479. PubMed ID: 26409790
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Recentrifuge: Robust comparative analysis and contamination removal for metagenomics.
    Martí JM
    PLoS Comput Biol; 2019 Apr; 15(4):e1006967. PubMed ID: 30958827
    [TBL] [Abstract][Full Text] [Related]  

  • 20. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
    Lu YY; Chen T; Fuhrman JA; Sun F
    Bioinformatics; 2017 Mar; 33(6):791-798. PubMed ID: 27256312
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.