221 related articles for article (PubMed ID: 24858075)
1. K-mer natural vector and its application to the phylogenetic analysis of genetic sequences.
Wen J; Chan RH; Yau SC; He RL; Yau SS
Gene; 2014 Aug; 546(1):25-34. PubMed ID: 24858075
[TBL] [Abstract][Full Text] [Related]
2. Phylogenetic analysis of protein sequences based on a novel k-mer natural vector method.
Zhang Y; Wen J; Yau SS
Genomics; 2019 Dec; 111(6):1298-1305. PubMed ID: 30195069
[TBL] [Abstract][Full Text] [Related]
3. A novel method of characterizing genetic sequences: genome space with biological distance and applications.
Deng M; Yu C; Liang Q; He RL; Yau SS
PLoS One; 2011 Mar; 6(3):e17293. PubMed ID: 21399690
[TBL] [Abstract][Full Text] [Related]
4. kmer2vec: A Novel Method for Comparing DNA Sequences by word2vec Embedding.
Ren R; Yin C; S-T Yau S
J Comput Biol; 2022 Sep; 29(9):1001-1021. PubMed ID: 35593919
[TBL] [Abstract][Full Text] [Related]
5. Statistically Consistent k-mer Methods for Phylogenetic Tree Reconstruction.
Allman ES; Rhodes JA; Sullivant S
J Comput Biol; 2017 Feb; 24(2):153-171. PubMed ID: 27387364
[TBL] [Abstract][Full Text] [Related]
6. k-mer sparse matrix model for genetic sequence and its applications in sequence comparison.
Wen J; Zhang Y; Yau SS
J Theor Biol; 2014 Dec; 363():145-50. PubMed ID: 25158165
[TBL] [Abstract][Full Text] [Related]
7. Alignment-free approaches for predicting novel Nuclear Mitochondrial Segments (NUMTs) in the human genome.
Li W; Freudenberg J; Freudenberg J
Gene; 2019 Apr; 691():141-152. PubMed ID: 30630097
[TBL] [Abstract][Full Text] [Related]
8. Comparative analysis using K-mer and K-flank patterns provides evidence for CpG island sequence evolution in mammalian genomes.
Chae H; Park J; Lee SW; Nephew KP; Kim S
Nucleic Acids Res; 2013 May; 41(9):4783-91. PubMed ID: 23519616
[TBL] [Abstract][Full Text] [Related]
9. Genome classification improvements based on k-mer intervals in sequences.
Han GB; Cho DH
Genomics; 2019 Dec; 111(6):1574-1582. PubMed ID: 30439480
[TBL] [Abstract][Full Text] [Related]
10. Segmented K-mer and its application on similarity analysis of mitochondrial genome sequences.
Yu HJ
Gene; 2013 Apr; 518(2):419-24. PubMed ID: 23353775
[TBL] [Abstract][Full Text] [Related]
11. An ensemble distance measure of k-mer and Natural Vector for the phylogenetic analysis of multiple-segmented viruses.
Huang HH
J Theor Biol; 2016 Jun; 398():136-44. PubMed ID: 26972479
[TBL] [Abstract][Full Text] [Related]
12. Exploring the dynamic variations of viral genomes via a novel genetic network.
Zhang Y; Wen J; Xi K; Pan Q
Mol Phylogenet Evol; 2022 Oct; 175():107583. PubMed ID: 35810971
[TBL] [Abstract][Full Text] [Related]
13. KINN: An alignment-free accurate phylogeny reconstruction method based on inner distance distributions of k-mer pairs in biological sequences.
Tang R; Yu Z; Li J
Mol Phylogenet Evol; 2023 Feb; 179():107662. PubMed ID: 36375789
[TBL] [Abstract][Full Text] [Related]
14. The effects of sampling on the efficiency and accuracy of k-mer indexes: Theoretical and empirical comparisons using the human genome.
Almutairy M; Torng E
PLoS One; 2017; 12(7):e0179046. PubMed ID: 28686614
[TBL] [Abstract][Full Text] [Related]
15. K-mer-Based Motif Analysis in Insect Species across
Cserhati M; Xiao P; Guda C
Comput Math Methods Med; 2019; 2019():4259479. PubMed ID: 31827584
[TBL] [Abstract][Full Text] [Related]
16. A simple k-word interval method for phylogenetic analysis of DNA sequences.
Ding S; Li Y; Yang X; Wang T
J Theor Biol; 2013 Jan; 317():192-9. PubMed ID: 23085256
[TBL] [Abstract][Full Text] [Related]
17. Optimal choice of k-mer in composition vector method for genome sequence comparison.
Das S; Deb T; Dey N; Ashour AS; Bhattacharya DK; Tibarewala DN
Genomics; 2018 Sep; 110(5):263-273. PubMed ID: 29180261
[TBL] [Abstract][Full Text] [Related]
18. An improved model for whole genome phylogenetic analysis by Fourier transform.
Yin C; Yau SS
J Theor Biol; 2015 Oct; 382():99-110. PubMed ID: 26151589
[TBL] [Abstract][Full Text] [Related]
19. A new distribution vector and its application in genome clustering.
Zhao B; He RL; Yau SS
Mol Phylogenet Evol; 2011 May; 59(2):438-43. PubMed ID: 21385621
[TBL] [Abstract][Full Text] [Related]
20. Identifiability of Phylogenetic Parameters from k-mer Data Under the Coalescent.
Durden C; Sullivant S
Bull Math Biol; 2019 Feb; 81(2):431-451. PubMed ID: 29392644
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
