BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

205 related articles for article (PubMed ID: 24866534)

  • 1. Erasing errors due to alignment ambiguity when estimating positive selection.
    Redelings B
    Mol Biol Evol; 2014 Aug; 31(8):1979-93. PubMed ID: 24866534
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection.
    Fletcher W; Yang Z
    Mol Biol Evol; 2010 Oct; 27(10):2257-67. PubMed ID: 20447933
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Joint Bayesian estimation of alignment and phylogeny.
    Redelings BD; Suchard MA
    Syst Biol; 2005 Jun; 54(3):401-18. PubMed ID: 16012107
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Accurate large-scale phylogeny-aware alignment using BAli-Phy.
    Gupta M; Zaharias P; Warnow T
    Bioinformatics; 2021 Dec; 37(24):4677-4683. PubMed ID: 34320635
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny.
    Suchard MA; Redelings BD
    Bioinformatics; 2006 Aug; 22(16):2047-8. PubMed ID: 16679334
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The effects of alignment error and alignment filtering on the sitewise detection of positive selection.
    Jordan G; Goldman N
    Mol Biol Evol; 2012 Apr; 29(4):1125-39. PubMed ID: 22049066
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
    Huelsenbeck JP; Larget B; Alfaro ME
    Mol Biol Evol; 2004 Jun; 21(6):1123-33. PubMed ID: 15034130
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Statistical alignment with a sequence evolution model allowing rate heterogeneity along the sequence.
    Arribas-Gil A; Metzler D; Plouhinec JL
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(2):281-95. PubMed ID: 19407352
    [TBL] [Abstract][Full Text] [Related]  

  • 10. StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees.
    Novák A; Miklós I; Lyngsø R; Hein J
    Bioinformatics; 2008 Oct; 24(20):2403-4. PubMed ID: 18753153
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A Bayesian model comparison approach to inferring positive selection.
    Scheffler K; Seoighe C
    Mol Biol Evol; 2005 Dec; 22(12):2531-40. PubMed ID: 16120799
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BAli-Phy version 3: model-based co-estimation of alignment and phylogeny.
    Redelings BD
    Bioinformatics; 2021 Sep; 37(18):3032-3034. PubMed ID: 33677478
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Probabilistic phylogenetic inference with insertions and deletions.
    Rivas E; Eddy SR
    PLoS Comput Biol; 2008 Sep; 4(9):e1000172. PubMed ID: 18787703
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Scaling statistical multiple sequence alignment to large datasets.
    Nute M; Warnow T
    BMC Genomics; 2016 Nov; 17(Suppl 10):764. PubMed ID: 28185555
    [TBL] [Abstract][Full Text] [Related]  

  • 15. BayesCAT: Bayesian co-estimation of alignment and tree.
    Shim H; Larget B
    Biometrics; 2018 Mar; 74(1):270-279. PubMed ID: 28099991
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo.
    Pagel M; Meade A
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):3955-64. PubMed ID: 18852097
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Phylogenetic inference under recombination using Bayesian stochastic topology selection.
    Webb A; Hancock JM; Holmes CC
    Bioinformatics; 2009 Jan; 25(2):197-203. PubMed ID: 19028720
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Not so different after all: a comparison of methods for detecting amino acid sites under selection.
    Kosakovsky Pond SL; Frost SD
    Mol Biol Evol; 2005 May; 22(5):1208-22. PubMed ID: 15703242
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A random effects branch-site model for detecting episodic diversifying selection.
    Kosakovsky Pond SL; Murrell B; Fourment M; Frost SD; Delport W; Scheffler K
    Mol Biol Evol; 2011 Nov; 28(11):3033-43. PubMed ID: 21670087
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evolutionary inference via the Poisson Indel Process.
    Bouchard-Côté A; Jordan MI
    Proc Natl Acad Sci U S A; 2013 Jan; 110(4):1160-6. PubMed ID: 23275296
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.