205 related articles for article (PubMed ID: 24866534)
1. Erasing errors due to alignment ambiguity when estimating positive selection.
Redelings B
Mol Biol Evol; 2014 Aug; 31(8):1979-93. PubMed ID: 24866534
[TBL] [Abstract][Full Text] [Related]
2. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
3. The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection.
Fletcher W; Yang Z
Mol Biol Evol; 2010 Oct; 27(10):2257-67. PubMed ID: 20447933
[TBL] [Abstract][Full Text] [Related]
4. Joint Bayesian estimation of alignment and phylogeny.
Redelings BD; Suchard MA
Syst Biol; 2005 Jun; 54(3):401-18. PubMed ID: 16012107
[TBL] [Abstract][Full Text] [Related]
5. Accurate large-scale phylogeny-aware alignment using BAli-Phy.
Gupta M; Zaharias P; Warnow T
Bioinformatics; 2021 Dec; 37(24):4677-4683. PubMed ID: 34320635
[TBL] [Abstract][Full Text] [Related]
6. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny.
Suchard MA; Redelings BD
Bioinformatics; 2006 Aug; 22(16):2047-8. PubMed ID: 16679334
[TBL] [Abstract][Full Text] [Related]
7. The effects of alignment error and alignment filtering on the sitewise detection of positive selection.
Jordan G; Goldman N
Mol Biol Evol; 2012 Apr; 29(4):1125-39. PubMed ID: 22049066
[TBL] [Abstract][Full Text] [Related]
8. Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
Huelsenbeck JP; Larget B; Alfaro ME
Mol Biol Evol; 2004 Jun; 21(6):1123-33. PubMed ID: 15034130
[TBL] [Abstract][Full Text] [Related]
9. Statistical alignment with a sequence evolution model allowing rate heterogeneity along the sequence.
Arribas-Gil A; Metzler D; Plouhinec JL
IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(2):281-95. PubMed ID: 19407352
[TBL] [Abstract][Full Text] [Related]
10. StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees.
Novák A; Miklós I; Lyngsø R; Hein J
Bioinformatics; 2008 Oct; 24(20):2403-4. PubMed ID: 18753153
[TBL] [Abstract][Full Text] [Related]
11. A Bayesian model comparison approach to inferring positive selection.
Scheffler K; Seoighe C
Mol Biol Evol; 2005 Dec; 22(12):2531-40. PubMed ID: 16120799
[TBL] [Abstract][Full Text] [Related]
12. BAli-Phy version 3: model-based co-estimation of alignment and phylogeny.
Redelings BD
Bioinformatics; 2021 Sep; 37(18):3032-3034. PubMed ID: 33677478
[TBL] [Abstract][Full Text] [Related]
13. Probabilistic phylogenetic inference with insertions and deletions.
Rivas E; Eddy SR
PLoS Comput Biol; 2008 Sep; 4(9):e1000172. PubMed ID: 18787703
[TBL] [Abstract][Full Text] [Related]
14. Scaling statistical multiple sequence alignment to large datasets.
Nute M; Warnow T
BMC Genomics; 2016 Nov; 17(Suppl 10):764. PubMed ID: 28185555
[TBL] [Abstract][Full Text] [Related]
15. BayesCAT: Bayesian co-estimation of alignment and tree.
Shim H; Larget B
Biometrics; 2018 Mar; 74(1):270-279. PubMed ID: 28099991
[TBL] [Abstract][Full Text] [Related]
16. Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo.
Pagel M; Meade A
Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):3955-64. PubMed ID: 18852097
[TBL] [Abstract][Full Text] [Related]
17. Phylogenetic inference under recombination using Bayesian stochastic topology selection.
Webb A; Hancock JM; Holmes CC
Bioinformatics; 2009 Jan; 25(2):197-203. PubMed ID: 19028720
[TBL] [Abstract][Full Text] [Related]
18. Not so different after all: a comparison of methods for detecting amino acid sites under selection.
Kosakovsky Pond SL; Frost SD
Mol Biol Evol; 2005 May; 22(5):1208-22. PubMed ID: 15703242
[TBL] [Abstract][Full Text] [Related]
19. A random effects branch-site model for detecting episodic diversifying selection.
Kosakovsky Pond SL; Murrell B; Fourment M; Frost SD; Delport W; Scheffler K
Mol Biol Evol; 2011 Nov; 28(11):3033-43. PubMed ID: 21670087
[TBL] [Abstract][Full Text] [Related]
20. Evolutionary inference via the Poisson Indel Process.
Bouchard-Côté A; Jordan MI
Proc Natl Acad Sci U S A; 2013 Jan; 110(4):1160-6. PubMed ID: 23275296
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]